Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03780 ATGGCGACGCCGTTAATCCCGCAGCAGCTCTTAGACGGCGGTGGAGGAGTGGCGGTTCTGTCGAATCTCGTTCCTTCTACCTCCTCCAATGGTGGTGGTGGATTCAACCGTTCCTCTTTATCGGAATCGCCAATTTTGATTTTCTCGTTCTTCCAAAAAGCGATTCGGAACGAGCTTGATGCGTTGCACAGATTAGCTTTGGCTTTTGCTACTGGAAATCGTTCCGATATTCAACCTCTCTCTGAACGCTACCATTTTCTTAGATCGATGTATAAACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATAAACGTGTGAAGAACGTAGCACAAACATATTCGCTTGAACACAAGGGTGAAAGCAATCTGTTTGACCATTTATTTGAGCTTTTAAACTCTCCCGATGATAACGATGAAAGTTTCCGAAGGGAGTTAGCGTCTTGCACTGGAGCTTTGCAGACATCTGTTAGTCAACACATGGCTAAGGAGCAGCAGCAAGTGTTTCCGCTTCTTATTGAGAAGTTCTCACTGGAGGAACAAGCATCTTTAGTTTGGCAATTTCTTTGCAGTATTCCAGTGAATATGATGGCCGAATTTCTCCCATGGCTTTCCACATCCATATCACCCGATGAATCTCAGGATTTACGGATGTGCTTAAGCAAGATAGTTCCAGAAGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGATGGGAGAAGTAGTGCTAACACGGTTGAAAATTGTGTAGATCATTCTCAGGTTCAATGTAGTCCTAGTCCTTTAGCCCATCAGATTGGGAAAATAAATTGTGCATGCGAGTCCACTGTATCTGGGAAAAGAAAATATTCTGCAGCTATTCTAGATGTTCCTGAGACAATTGGTTCACATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTGAATGAGATTGCAGTGGAGACCAGAAAGATACAACATTCTGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGCTGCAATTTATTGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGGAGATTTTTCTTTCTTTCAGGAGCACGCTGAAGAAGAAAGTCAATTTAATGACTTCCGGTCATTGATTGAAAGAATTCTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTAGTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTTGTTGGATCGTTAACTGAAGTTGAAGCAGAGATATTTCTGAAAAACATACAATTGGCAGCTCCTGCGATAGATTCCGCTTTAGTAACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGCATCAGGTTTCTGTCCTGCTAAAAAAATTGTCCGGTCTTCCTGTACTTGTCCTTCTGCATTGTCTGGTAAAGGTTGCCCAATATTAGCTGAATCAGATGGGACCCAAAGATCAGTGAAGCGAAACATATTGGAGTTGCACAAAAATGGAGATGTCTCAAAAACACCAGAAAATGAATGTACCCAGAAACCATGCTGTGGTGCTCGGTCTTGTTGTGTGCCAGCTTTAGGGGTCAACAGTAACAATTTGGGGCTGAGTTCACTTTCTGCTGCCAAGTCCTTAAGGAACTTCACTTCTTCCGCCCCATCTCTTAATTCTAGTCTTTTCATATGGGAAACAGACAGTAGCTCATGTGATGTTGGCTCTGCAGAAAGGCCAATTGATACCATATTTAAATTCCATAAAGCTATACGCATAGATCTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAACTATTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAACGTGAGCCATTCATACACGCTGGACCATAAGGCGGAAGAAAAGTTATTTGAAGATATTTCTTGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCAATGCAGAGGACCCATATGTCAGAGGATTTAAGTGAAAGTAATTTGGGAATATCTGATGCCAATGATAGTGATGATATCAGGAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGTAAATCTATACGAGTGACCCTTGATCAGCATATTTTCAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAAGATGAACAGAACAAAATGATGGACACATGGAAACAAGCAACTAAGAATACAATGTTTAATGAATGGCTAAATGAATGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCAGAACGTAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATGAGAATGAAATCGTATCTGAAATCCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGGAGAAAGGCATATCTAGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCATCGAATAAACAAATAGAAGGATACTTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAACACTATAAGAGAAATTGCAAAATTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCTTGCATGACTATACAGCCAGTTGGGCCCATATGCACGACGCCTTCATGTAATGGACTTTCAATGGCAAAGTACTATTGTAACATTTGCAAATTTTTTGACGATGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGCATTGATTACTTTCATTGTATGAAATGCAATTGTTGCGTGGGGATTAAATCAGTGTCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACAGTCAGAGCTCTAGCTTGTGGCCATTACATGCATTCATCTTGTTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCATTGTTGGCTGCTGAGCAGCTTCCTGAAGAGTACAGGGACCGCACTCAGGACATACTCTGCCATGACTGTGATCGAAAGGGAACTTCACACTTCCACTGGTTATATCATAAATGTGGATTTTGTGGCTCGTACAATACCCGGGTGATCAAGAGCGAGACAACAAATTCCAGCTGCCCATAA 3702 0.4138 MATPLIPQQLLDGGGGVAVLSNLVPSTSSNGGGGFNRSSLSESPILIFSFFQKAIRNELDALHRLALAFATGNRSDIQPLSERYHFLRSMYKHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESNLFDHLFELLNSPDDNDESFRRELASCTGALQTSVSQHMAKEQQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRMCLSKIVPEEKLLQKVIFTWMDGRSSANTVENCVDHSQVQCSPSPLAHQIGKINCACESTVSGKRKYSAAILDVPETIGSHPIDEILLWHNAIKKELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERILSEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELVYQSLCMMPLKLIERVLPWFVGSLTEVEAEIFLKNIQLAAPAIDSALVTLFSGWACKARKNGQCLSSSASGFCPAKKIVRSSCTCPSALSGKGCPILAESDGTQRSVKRNILELHKNGDVSKTPENECTQKPCCGARSCCVPALGVNSNNLGLSSLSAAKSLRNFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDETTIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEAMQRTHMSEDLSESNLGISDANDSDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLIESPGSTSQTETSERSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGYLPSFRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRTQDILCHDCDRKGTSHFHWLYHKCGFCGSYNTRVIKSETTNSSCP 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03780 1233 CDD Hr-like 47 173 - -
Trre4g03780 1233 Pfam Zinc-ribbon 1164 1221 IPR039512 -
Trre4g03780 1233 Gene3D - 1187 1230 - -
Trre4g03780 1233 CDD RING-H2_Pirh2-like 1116 1159 - -
Trre4g03780 1233 Pfam CHY zinc finger 987 1063 IPR008913 GO:0008270
Trre4g03780 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 684 1229 - -
Trre4g03780 1233 SUPERFAMILY ARM repeat 124 469 IPR016024 -
Trre4g03780 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1161 IPR013083 -
Trre4g03780 1233 ProSiteProfiles Zinc finger RING-type profile. 1117 1159 IPR001841 -
Trre4g03780 1233 FunFam Zinc finger protein-related isoform 1 1112 1161 - -
Trre4g03780 1233 ProSiteProfiles Zinc finger CTCHY-type profile. 1053 1116 IPR017921 -
Trre4g03780 1233 SUPERFAMILY CHY zinc finger-like 980 1044 IPR037274 GO:0008270
Trre4g03780 1233 MobiDBLite consensus disorder prediction 873 894 - -
Trre4g03780 1233 SUPERFAMILY Zinc hairpin stack 1054 1109 IPR037275 -
Trre4g03780 1233 ProSiteProfiles Zinc finger CHY-type profile. 980 1050 IPR008913 GO:0008270
Trre4g03780 1233 CDD Hr-like 643 803 - -
Trre4g03780 1233 Pfam Hemerythrin HHE cation binding domain 301 435 IPR012312 -
Trre4g03780 1233 Pfam Hemerythrin HHE cation binding domain 641 804 IPR012312 -
Trre4g03780 1233 Pfam Hemerythrin HHE cation binding domain 53 175 IPR012312 -
Trre4g03780 1233 Pfam Ring finger domain 1116 1158 IPR001841 -
Trre4g03780 1233 CDD Hr-like 304 433 - -
Trre4g03780 1233 Gene3D nmb1532 protein domain like 637 874 - -
Trre4g03780 1233 SUPERFAMILY RING/U-box 1114 1163 - -
Trre4g03780 1233 Gene3D nmb1532 protein domain like 304 452 - -
Trre4g03780 1233 Gene3D nmb1532 protein domain like 43 193 - -
Trre4g03780 1233 SMART ring_2 1117 1158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03780 Trre-Chr4 45692026 45702627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03780 1 1232 C2H2 Transcription Factor Family AT3G18290 66.719 0.0 1675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03780 K16276 - gmx:100791354 2144.01