Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03766 ATGGATAATAATAATAAGCATATCCCTATGTTCACAAATATTACACATATCTCCTTCCTTGTAATAATAATAATAATAATAATCACTTTTTATCCAACACAATCCTACTCTCAACCACAACAACATCAATCTGTTAACAATTATTCAAGTTGTGCAGAATCTTACTCCTACAACTGCGGTAGCATCTCCGACATCTATTATCCATTTTGGGGACAAGATCGTCCTTCTTACTGCAGTGCCGGCAAACTTTTTTACCTTAACTGCAACGAAAACAACATTACTACCATTCAATTATCCCCACTAAACTTCACAGTACTAGAAATTTTAACATATAGTCATATCATGATACTCAAAAGAACAGACCTTTCACAAAATCTTTGTTCTCCTCAATTTAATGATACTTATTTCAATCCAACTTTGTTTCAATATCCAAGAAGAATTGTCAACAACATCACCATATACTATAATTGTAATTCCACTGTCTCTGAATATATACTTGATAATTCTCTATGTGGATCTCTCAACCCTTCTTTCTGTTCTACTGGTGATGATCAAGATGGACTGTTAAGGAATTGCAAGGAACATATTCAAGTGCCAGTAGGAACAGATTTTCCTATAAATGGAGATTATTTTGGTTATTTTAAACTTGATGTTCTTGAAAGTGGTTTGAATCAAGGATTTCAGGTGAAGTATAGTGTGAATAAGGAATGTTTAATGTGTTTGGGAAATAGTGAAGTAGAAAATTGTACATTGAAAAGCAGTAGTGATATTGAGAAACTTGCTGTGTCCTCTTGCTATTATGATAATTGTCCAGCTGGATCCAATGTTTTTACCACAAACTGTCTTCACAAAATCAGTAAGCCGTTAAGCTGGCAAAGGAAAATGCAAGCTATCTCAGGCAGTGCAAGTGCAACATTTGCTGGATTATCAATATGTATCATTATCATTTATTTCATATACAAGTACATAAAGAAGAACCAAGACATCACAAATCAAACCAAAAAGAATGATAAAGACATTGAAGCATTCTTAAAAACTCATGAAGGATTTTCCATAAGAAGATACAAATTCTCGGATATAAAAAAAATGACCAATAACTTTGAAATCAAACTAGGACAAGGTGGCTATGGTATCGTATACAAAGGAAAGCTACTCAATGACCGTCCTGTGGCCGTGAAGATATTGAATGCAGCCAAAGGAAATGGTGAAGAATTTATGAATGAAGTTTCTAGCATTACTAAAACCTCTCACATTAATGTTGTTGCCCTTCTTGGATTTTGTTTTGACGGTCGCAAGAAAGTTCTTATCTACGAATTAATGTCAAATGGTTCGCTTGACAAATTTATTTACAACAACCAACCTGAAGCCATTCAATCTCTTAGTTGGGAGATACTTTATCACATTGCAAAAGGAATAGCTCGAGGTCTAGAGTACTTGCATAGAGGATGTAGCACACGAATTTTACATTTTGACATCAAACCGCATAACATTCTTTTAGATGAGAAATTTTGTCCAAAGATATCAGATTTTGGACTTGCTAGACTTTGCCCTAAACAAGATAGCATTATTTCGATGTCAGATGCTAGAGGGACAATCGGATATGTAGCTCCTGAGTTGTGGAATAGAAATTTTGGAGGCGTTTCACACAAGTCTGATGTTTATAGTTTTGGAATGTTGCTAATGGAAATGGTTGGAGGGAGGAAAAACATTAATGCTAATGCAAGCCATTCAAGTGAGATATACTTTCCTTATTGGGTATACAAGAAGCTTGATCTAGGCAGTAATTTGAGACCGGGTGAAGACATTGCCGCAGAAGAAGATGAGATCGCAAAGAGAATGACCATCGTGGGCTTATGGTGCATTCAAACATTTCCAAATGACAGACCTACAATGAGTAGAGTGATTGAAATGCTAGAAGGAAATGTAAATTCATTAGAAATACCACCAAAACCTATTCTTTCTTCTCCTACTAGATCAGTAGCATAA 1986 0.3494 MDNNNKHIPMFTNITHISFLVIIIIIIITFYPTQSYSQPQQHQSVNNYSSCAESYSYNCGSISDIYYPFWGQDRPSYCSAGKLFYLNCNENNITTIQLSPLNFTVLEILTYSHIMILKRTDLSQNLCSPQFNDTYFNPTLFQYPRRIVNNITIYYNCNSTVSEYILDNSLCGSLNPSFCSTGDDQDGLLRNCKEHIQVPVGTDFPINGDYFGYFKLDVLESGLNQGFQVKYSVNKECLMCLGNSEVENCTLKSSSDIEKLAVSSCYYDNCPAGSNVFTTNCLHKISKPLSWQRKMQAISGSASATFAGLSICIIIIYFIYKYIKKNQDITNQTKKNDKDIEAFLKTHEGFSIRRYKFSDIKKMTNNFEIKLGQGGYGIVYKGKLLNDRPVAVKILNAAKGNGEEFMNEVSSITKTSHINVVALLGFCFDGRKKVLIYELMSNGSLDKFIYNNQPEAIQSLSWEILYHIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDEKFCPKISDFGLARLCPKQDSIISMSDARGTIGYVAPELWNRNFGGVSHKSDVYSFGMLLMEMVGGRKNINANASHSSEIYFPYWVYKKLDLGSNLRPGEDIAAEEDEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGNVNSLEIPPKPILSSPTRSVA 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03766 661 Pfam Wall-associated receptor kinase galacturonan-binding 53 116 IPR025287 GO:0030247
Trre4g03766 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Trre4g03766 661 Pfam Protein tyrosine and serine/threonine kinase 368 638 IPR001245 GO:0004672|GO:0006468
Trre4g03766 661 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Trre4g03766 661 FunFam PR5-like receptor kinase 440 650 - -
Trre4g03766 661 PANTHER RUST RESISTANCE KINASE LR10-RELATED 336 655 IPR045874 GO:0004672
Trre4g03766 661 Gene3D Phosphorylase Kinase; domain 1 324 439 - -
Trre4g03766 661 SUPERFAMILY Protein kinase-like (PK-like) 348 639 IPR011009 -
Trre4g03766 661 Gene3D Transferase(Phosphotransferase) domain 1 440 647 - -
Trre4g03766 661 ProSiteProfiles Protein kinase domain profile. 365 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03766 661 SMART serkin_6 365 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03766 Trre-Chr4 45509857 45513861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03766 54 660 Receptor kinase-like Gene Family AT1G66910 37.382 2.79e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre4g03766 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03766 - - tpra:123887353 1102.43