Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03763 ATGGCTTCCGATTCGTCTTCAGAAGGTGGTGCTCTAGATGGTGCTCTGGATCCTTCAAAATTTAGTAAATTGAGTATGGAGAAAAAAAGAGAGCTCGTATATGAAATATCTAAAGTGTCTCATGATGGTGCATCCGAGATGTTGCAGTCATGTAGTCGTCAAGAGATTTTGCAAATATTGTGTGCTGAGATGGGAAAAGAAAGGAAGTATACTGGGTTGACAAAGGTGAAAATTATCGAAAATCTTCTAAAAATTGTTTCTGAAAAGAATTCAAGCGGACATGATATTGCCACCGACCCTGAACCACATTCAAACGGTCAGAAACCGGCTAAAAGGCAGAGAAAAATTGAGAATCCATCTCGGTTAGCTATTCCTGCAAACAATGTTTTAGTCAATAATGGTGACGATGCAAGTATTAATACCACATACTGCAAAAACTCAGCATGCAAGGCTACCATAAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGTTGTATTTGTCATCAATATGATGACAATAAGGACCCTAGCCTGTGGTTAATATGCAGCTCTGAAGCTCCATTTCCCGGTGTTTCCTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGCTGGTTCTGGAATTGGCAAAGACGGTGAACATCCGAAGCTTGATGGAGGCTTCTACTGTGTCTCATGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATGCCAGACGTGTGGACATTCTATGTTATCGTGTCTCCTTAAGCCAAAAACTTTTACAAGGGACTGTAGTCTATGGAGAGCTTTATGAAATTGTTGATCAAGCCGTGAAGAAACTTGAACCAGAGGTGGGTCCACTGACTGGCTCACCACTAAAGATTGGTAGGGGAATTGTGAACAGGCTTTCTTCAGGACCTGAGGTTCAGAAACTTTGTGGCATTGCTCTTGAGTCACTTGATTCGATGCTTTCTAAAAGGATCTTGCCTCCGACGCCCAATCCAACTATTCAAGATGCGAGTTTATTAGCGCCAAATATGGTGAAGTTTGAAGATGTCACTGCAACATCCCTCACTGTTATTTTGTGTTTGGAAGATCCTTCTGGAGAAAATAATGTTGGTTACGCCATGTGGCATCGCAAAGCTGATGATGTGAACTATCCGTTGGACCCAATTTGCACGAATCTCCTACCAAATAGAAGACTCGACATCATGGATTTACTTCCAGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGAAGTCGGGTATGTGGGAAGTTAAAGTCACAACAGAGCATGGTGAGGATGAAGTCCCAAATTGTTCAGCAACGGAAAGAAGTCAGAGCCCTGTAACCAACTGTAGCAGTCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATCATAGCGACCAGACCGATAATCGATCAGATAATTATCCTATTTATCACAAGGATAGCAACCAGCTTGCTTCTGCAAATGTATCTAATGATGCTATTAACTGTTCCAATTTGGGCGGAGTGGGACGTCCCACTGATGCAGATTCCTTGTCAGACAAACAGGTTGCTGTCGGAATGACTGGCACTGTACCTAGTTCTGATGCACTAAAGCTTGAAAACAAGCATTCGGCAGAGGAACAAGTAACCGAGGACATGAGCACTGATGATGGGTCAGTTCCAACAGGAAGGGAAGGTGTTCCGGTAGCAGGTAGCTCAAAAGGGGGATTGCCTAATACTCCCGGTAGGTTGGAATTACTTAAAGATGGTCTGGGAAGAAAAGGTAGGTCCAAAGCAAGTGGCAAAGATGTAGAAAATGGATCTGGGAAAAGGAGTGGCCCTCGAGATGGAGGCACATCCAAGAAGAGAAGTGGTGAAAGGCAAGACGAGGGCTGTGAGGGAAATGGTTTTCCAGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAAAAGAACTTCAGACAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCATGAAGATCCGGCTTCTCTTGCTGAGCAACTTGTGGACACCTTCTCAGATTGTGTATCAAACAAGAGATCATCATTTCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2199 0.4256 MASDSSSEGGALDGALDPSKFSKLSMEKKRELVYEISKVSHDGASEMLQSCSRQEILQILCAEMGKERKYTGLTKVKIIENLLKIVSEKNSSGHDIATDPEPHSNGQKPAKRQRKIENPSRLAIPANNVLVNNGDDASINTTYCKNSACKATINQADAFCKRCSCCICHQYDDNKDPSLWLICSSEAPFPGVSCGLSCHLECALKHAGSGIGKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDARRVDILCYRVSLSQKLLQGTVVYGELYEIVDQAVKKLEPEVGPLTGSPLKIGRGIVNRLSSGPEVQKLCGIALESLDSMLSKRILPPTPNPTIQDASLLAPNMVKFEDVTATSLTVILCLEDPSGENNVGYAMWHRKADDVNYPLDPICTNLLPNRRLDIMDLLPATEYSFKVVSNDLRKSGMWEVKVTTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNHSDQTDNRSDNYPIYHKDSNQLASANVSNDAINCSNLGGVGRPTDADSLSDKQVAVGMTGTVPSSDALKLENKHSAEEQVTEDMSTDDGSVPTGREGVPVAGSSKGGLPNTPGRLELLKDGLGRKGRSKASGKDVENGSGKRSGPRDGGTSKKRSGERQDEGCEGNGFPDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPEEIRIVKIYVDTFHEDPASLAEQLVDTFSDCVSNKRSSFPAGFCMKLWH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03763 732 ProSiteProfiles Fibronectin type-III domain profile. 349 444 IPR003961 GO:0005515
Trre4g03763 732 MobiDBLite consensus disorder prediction 594 641 - -
Trre4g03763 732 MobiDBLite consensus disorder prediction 439 492 - -
Trre4g03763 732 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g03763 732 CDD PHD_VIN3_plant 164 229 - -
Trre4g03763 732 MobiDBLite consensus disorder prediction 449 474 - -
Trre4g03763 732 MobiDBLite consensus disorder prediction 537 641 - -
Trre4g03763 732 SUPERFAMILY Fibronectin type III 349 450 IPR036116 GO:0005515
Trre4g03763 732 MobiDBLite consensus disorder prediction 475 489 - -
Trre4g03763 732 Pfam PHD - plant homeodomain finger protein 144 263 IPR032881 -
Trre4g03763 732 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 732 IPR044514 GO:0010048|GO:0040029
Trre4g03763 732 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03763 Trre-Chr4 45477776 45483571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03763 10 610 PHD Gene Family AT4G30200 48.107 6.97e-159 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03763 - - gmx:100794721 1188.33