Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03745 ATGAATCCCCGCGCAAAGTTACCTGCGTGTTTAACACGGGACATAGACGTTGGATCAGGAGTCTTGACACTCACTTGGAATGGATTTTGCAAAATCGCACTTCCTAATGAAAATTCTGAAATAACTATGAACTTAGTTACATATTTAGCTAAAATGGAACAACTTGCATCTGGTATTCACCTTAGGTTGCGATCTCGTGCTTTTATTGTTGCAGCTTCGAAGGATAATAGGGTTGTGTTTGTGAACCTTGATGCTTGTATGGCTTCACAAATTGTTACAATTAAAGTAATTGAGAGGTTGAAAGCAAGTTATGGTGATCTATATATTGAAAATAATGTAGCTATTAGTGCAACTCACACTCATTCTGGTCTTGTAGGGTTATCTTCCATATTTTGTGTATATTATAACATCTTATGGATTTGTGCGTCAGTCCTTTGTGCATATACAAGAAAAATAATTGAAAGCTCCAAGTCAAACTGTATACATCATGTCTTACTTTTAACTGGTCATTCTGCTGATCTGTCTTTGAAAGGAAGTCCATACTGGATGGCTCCAGAGCTAATGCAAGCGGTCATACATAAAGATAACAACTCTGATCTAGCTTTTGCTATTGACACTGGAAGCCAGGTTTGTAACCTTGCTTGGAGTAAAAATGTGAATGAGCTTGTAAGGGTGAGAGGCTTGCCTATCCTTATTGTTGATCGCGGCCAAATTGTGAAGGCGATGATCTCAAGGACATTGCACAAAAGCTTACTTGTTGATCAAGGTTCTTCTGAGATGCATCTTCATTTTTCGATCTTCATCAGCACATTTGTCCTTGTTGCTGCTATTTTATCTGTGTTGGCAACACTTGCGGTGACCGCAGCCATATGTTTCTATTGCCACCGACGCCGAAAAAATGGCAGCCAACCGAACAATAAAGAATTTAGCGTTAAGTTTCGGTATTTCACTCCTGAAGAACTAAAACATGCCACAGACCAATTTGCCGAAGGAAATCATCTTGCATATGGAGGCACTGCGGCTGTGTATAAAGGCATACTGCAGCGTGAAGGGCGTCCTGTTGCAGTGAAGAGGCTTGAAGACTACCAACCTGACATAGATTTGAGGTTTAAGACTGAAGTTGAGAGGCTGACTGAACTTAACCATCCAAATATTGTAGCCTTATATGGATGCACTCGACCCTTAGAGAAGCCTTGTATGCTTGTTTATGAGTATGTCGAGAATAAAGATTTGGAGCATCATCTTCGTATTGCAAGAATTTTTCATCTTCCTTGGAATATTAGGATGAATATTGCTGTGGAGATAGCAAGTGCATTGAAGTATATTCATGCTCTTGACATCATTCACAGAGACATAAAACCCAGCAATATTCTTCTTAACAAAGATATGCATGCCAAAGTAGGAGATTTTGGATTCGCACGTCATGTTCCAAATGATCAAATCTATATTAAAACAAATCATGTACGAGGGACTCCAGGTTATGAAGATCCCGAGTACATACGAACCTACCAGTTTAGTAAAAAAAGTGACGTCTACAGCTTTGGAGTTGTGTTGATTCAGCTGATATCATCGTTGGAAGCTATTGATCTTAAAAGAGGTAATGATTGCAATCTAATCCTGATGGCTATGGAGATGATTCAAAATAATGCTTTGGATAAACTTGTGGATGTTCGGTGTCTAGAAAAGTCTTCTAAAGATAGACCTAGCATGGACGAAGTGTTTAAACGTTTAGAAGAGATTCAGAGCGCTGGTGATCCTGATCCATTTTCACGATCATCTGATTCTAACTCCGTGAGCTATTGTTCAGCACAAAATGTTAGTGTATAG 1827 0.3919 MNPRAKLPACLTRDIDVGSGVLTLTWNGFCKIALPNENSEITMNLVTYLAKMEQLASGIHLRLRSRAFIVAASKDNRVVFVNLDACMASQIVTIKVIERLKASYGDLYIENNVAISATHTHSGLVGLSSIFCVYYNILWICASVLCAYTRKIIESSKSNCIHHVLLLTGHSADLSLKGSPYWMAPELMQAVIHKDNNSDLAFAIDTGSQVCNLAWSKNVNELVRVRGLPILIVDRGQIVKAMISRTLHKSLLVDQGSSEMHLHFSIFISTFVLVAAILSVLATLAVTAAICFYCHRRRKNGSQPNNKEFSVKFRYFTPEELKHATDQFAEGNHLAYGGTAAVYKGILQREGRPVAVKRLEDYQPDIDLRFKTEVERLTELNHPNIVALYGCTRPLEKPCMLVYEYVENKDLEHHLRIARIFHLPWNIRMNIAVEIASALKYIHALDIIHRDIKPSNILLNKDMHAKVGDFGFARHVPNDQIYIKTNHVRGTPGYEDPEYIRTYQFSKKSDVYSFGVVLIQLISSLEAIDLKRGNDCNLILMAMEMIQNNALDKLVDVRCLEKSSKDRPSMDEVFKRLEEIQSAGDPDPFSRSSDSNSVSYCSAQNVSV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03745 608 Pfam Protein kinase domain 331 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03745 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Trre4g03745 608 SUPERFAMILY Protein kinase-like (PK-like) 302 581 IPR011009 -
Trre4g03745 608 MobiDBLite consensus disorder prediction 586 608 - -
Trre4g03745 608 MobiDBLite consensus disorder prediction 581 608 - -
Trre4g03745 608 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 257 591 IPR044652 GO:0004672
Trre4g03745 608 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 44 131 IPR031329 -
Trre4g03745 608 Gene3D Phosphorylase Kinase; domain 1 299 405 - -
Trre4g03745 608 SMART serkin_6 328 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03745 608 Gene3D Transferase(Phosphotransferase) domain 1 406 599 - -
Trre4g03745 608 ProSiteProfiles Protein kinase domain profile. 328 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03745 Trre-Chr4 45234018 45243979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03745 275 582 Receptor kinase-like Gene Family AT1G25390 40.580 5.48e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre4g03745 Pkinase 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03745 - - mtr:11438730 242.276