Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03740 ATGAAGCACAAAATGACATTTCTTCAAGCCTCCTTCCATTACAATAAACCTCAACTCAACATTATAACCATTATATTGTTCTTGATCACAACTGTTCAATCTATTAATCCAAAGTTTGAGGCATGCACCCCTCAAACTTGTGGAAATGGTCCCTCCATAAAGTATCCTTTTTGGATTCCATATCAACAAGATTCATTTTGTGGCTATCCACAATTTGAGATCACTTGCAAAAACAACAATCCAATTCTCAAAACTTCAACTTATGATCTTTTAGTAAAAAACATCTCTTACTCAAACTCTTCATTACTTGCAACCAACATAGATGTCTATGAAAAAAACTGTCCTGCTCCTATGTATAATTACAGTCTTGCCCTTGATCAAACTCCATTCACCTTTAGTTCTGAAAATTCCAATCTTTCTTTCTTCTATAACTGTACAACAGAACCTATAGATTATCCTACTTATGATGTAGAATGTGCAGAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAAGCATTAGAGCACAAAAACTATTCTTTGAATGAGTGTGAGTTTATGGTTAATACACCATTAGTGTTGAATACTAGTGTTAATTTCACTAGCTTGTTGAGAATGAGTTACATCGATGTTTTGAAGATGGGATTTGTTTTGAATTGGACTGCAGCTGATTGTCAACATTGTGAGAAAAGTGGTGGAAGATGTGGATTTGATAATTATCAGTTCATATGTTTCTGCAAGGATAAGTCCTACCTAAAAATTTGTGGTGACGATGATGACCCATGGAATTGGAAGAGGAAAGTCATTATTGCTCTTCCTGCTGCTATGATCGGAGCACTTGCAATGATAACTGCGATATATTTTTGTAAGCGCCGAAAGAATATAAGTTATGCAAAGTCTTATGTACAGTCTCGCAGCCTCTCTACCGATCCATCCTCAAAGGATGTTGAGAGCGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGTGTGCAACATTTCACTTATAGCGAGCTTGAAGAAGCCACAAACTACTTCGATCCAACAAAAGAACTTGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGAAAACTGTATGATGGGCGCAGTGTTGCAGTGAAGAGGTTATACGAGAACAATTACAAAAGAGTCGAGCAATTCATGAATGAAGTTAAACTCTTGGCAGGATTAGTCCATCCAAATCTTGTGTCTCTATATGGATGCACTTCACGCCACAGCCGCGAGCTTCTACTTGTCTATGAGTACGTTTCCAATGGAACTGTCGCTGATCATCTCCATGGTAAACAAACAAAGCATGGAAAGCTTTCTTGGCCAATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCATCGAGATATAAAAACCAATAATATTCTCCTTGACGCTCACTTCCGCGTCAAAGTAGCAGATTTTGGACTCTCACGTCTTTTTCCATATGATCAAACTCATGTTTCAACCGCTCCACAAGGGACTCCAGGTTATGTCGATCCTGATTATCATCAATGCTATCAACTTACCGATAAAAGTGATGTCTATAGCTTTGGAGTCGTGTTGATTGAGTTGATATCGTCTTTACCTGCCGTTGATATAACAAGACATAGACATGAAATCAATTTATCCAACATGGCTATCAACAGAATTCAAAATCAAGCATTACATGAAATTGTCGATCCTAACCTCGGTTATGACTCAGATCCCAAGGTAAAGAAAATGATAAATGCTATAGGTGAATTAGCATTTCAATGTTTACAAAGTTCCAAAGACTTAAGACCTTGCATGGATGATGTGTTAGAAACTTTATTGGATGTTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTAATGGACATTTCAAGCTTAGCTGATGATGTTGTTTTGTTGAATCATGATCCACCTCCATTATCACCTGATTCAAATCTTGGTAGCAATTATACTACACCAAATACTAGTGGTTAA 2019 0.3705 MKHKMTFLQASFHYNKPQLNIITIILFLITTVQSINPKFEACTPQTCGNGPSIKYPFWIPYQQDSFCGYPQFEITCKNNNPILKTSTYDLLVKNISYSNSSLLATNIDVYEKNCPAPMYNYSLALDQTPFTFSSENSNLSFFYNCTTEPIDYPTYDVECAENATHYSFAVFHKEALEHKNYSLNECEFMVNTPLVLNTSVNFTSLLRMSYIDVLKMGFVLNWTAADCQHCEKSGGRCGFDNYQFICFCKDKSYLKICGDDDDPWNWKRKVIIALPAAMIGALAMITAIYFCKRRKNISYAKSYVQSRSLSTDPSSKDVESGSQYFGGSQNFGVQHFTYSELEEATNYFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQTKHGKLSWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINRIQNQALHEIVDPNLGYDSDPKVKKMINAIGELAFQCLQSSKDLRPCMDDVLETLLDVQSDGKHKSKPEVMDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03740 672 ProSiteProfiles Protein kinase domain profile. 348 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03740 672 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 667 IPR044652 GO:0004672
Trre4g03740 672 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247
Trre4g03740 672 Gene3D Phosphorylase Kinase; domain 1 325 424 - -
Trre4g03740 672 Pfam Protein kinase domain 351 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03740 672 MobiDBLite consensus disorder prediction 650 672 - -
Trre4g03740 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre4g03740 672 MobiDBLite consensus disorder prediction 656 672 - -
Trre4g03740 672 FunFam Wall-associated receptor kinase-like 20 425 633 - -
Trre4g03740 672 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre4g03740 672 SMART serkin_6 348 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03740 672 Gene3D Transferase(Phosphotransferase) domain 1 425 636 - -
Trre4g03740 672 Pfam Wall-associated receptor kinase C-terminal 165 251 IPR032872 -
Trre4g03740 672 SUPERFAMILY Protein kinase-like (PK-like) 330 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03740 Trre-Chr4 45141926 45144804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03740 225 672 Receptor kinase-like Gene Family AT1G25390 50.855 4.04e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre4g03740 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03740 - - qsu:112024175 782.326