Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03739 ATGGATAATCACATCCCTATGTTCATAAATAGTATTAATTTCATCTTTTTCTTCTTCTTTATAATAATAACCACTTTCCCAACACAATCCCATTCTCAGCCACAAAAACCACCTCAACCAGTTTTCGATTATGATTATTCAAGTTGTAGAGACATAAAAAACTCATACAATTGTGGAAATATAACCAACATCTCTTATCCATTCTGGGGACACAATCGTCTTTTACCATGTGGCGCTGGCTACCCTTTTCAACTTTACTGCAACAAAAACAACATTACTACCATTCAATTATCCTCACAAAATTTCACAGTACTTGATATCAACACAAAAGAACACACCATCAAACTCCAAAAACAAAACCTTTATCAAGATCTTTGTTCTCCTCAATTTGTTGAATATTTTTTGCCTCCAACTCTGTTTCACCTTCTCCCAACTCTCAACAACATCACCGTATACTACAATTGTTCCTCTCAGTATTCATATATTTCTCCATGTGGACCTCGGAGTCAGAATCCTTCTTTCTTTTATGTTGGTGGTGATGAAAATGATGTGTTAAAGAGTTGCAAGGGACATATTCAAGTACCAGTAGGAACAGAGTTTCCTATGGACAAAAATAAATCTGGTTATTTTGAGCGTGAAGTTCTTGAAAGTGCTTGGGATAAGGAATTTGAGGTGGTGTATATCGTTGACGATGACGAATGTTTCAAGTGTTTGGGAAGGAATGAAGGAGATTGTGAATGGAAGAACAATAGGGATATTGTTAAGTCTTGCTATATTGATTATTGTCCAGATGGATCTATTGATTATTTATCACACTGTCCTCACAAAAACCCATGGAATTGGAAGAGGAAAGTCATTATTGCTCTTCCTGCTGCTATGATCGGAGCACTTGCAATGATAACTGCGATATATTTTTGTAAGCGCCGAAAGAATATAAGTTATGCAAAGTCTTATGTACAGTCTCGCAGCCTCTCTACCGATCCATCCTCAAAGGATGTTGAGAGCGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGTGTGCAACATTTCACTTATAGCGAGCTTGAAGAAGCCACAAACTACTTCGATCCAACAAAAGAACTTGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGAAAACTGTATGATGGGCGCAGTGTTGCAGTGAAGAGGTTATACGAGAACAATTACAAAAGAGTCGAGCAATTCATGAATGAAGTTAAACTCTTGGCAGGATTAGTCCATCCAAATCTTGTGTCTCTATATGGATGCACTTCACGCCACAGCCGCGAGCTTCTACTTGTCTATGAGTACGTTTCCAATGGAACTGTCGCTGATCATCTCCATGGTAAACAAACAAAGCATGGAAAGCTTTCTTGGCCAATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCATCGAGATATAAAAACCAATAATATTCTCCTTGACGCTCACTTCCGCGTCAAAGTAGCAGATTTTGGACTCTCACGTCTTTTTCCATATGATCAAACTCATGTTTCAACCGCTCCACAAGGGACTCCAGGTTATGTCGATCCTGATTATCATCAATGCTATCAACTTACCGATAAAAGTGATGTCTATAGCTTTGGAGTCGTGTTGATTGAGTTGATATCGTCTTTACCTGCCGTTGATATAACAAGACATAGACATGAAATCAATTTATCCAACATGGCTATCAACAGAATTCAAAATCAAGCATTACATGAAATTGTCGATCCTAACCTCGGTTATGACTCAGATCCCAAGGTAAAGAAAATGATAAATGCTATAGGTGAATTAGCATTTCAATGTTTACAAAGTTCCAAAGACTTAAGACCTTGCATGGATGATGTGTTAGAAACTTTATTGGATGTTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTAATGGACATTTCAAGCTTAGCTGATGATGTTGTTTTGTTGAATCATGATCCACCTCCATTATCACCTGATTCAAATCTTGGTAGCAATTATACTACACCAAATACTAGTGGTTAA 2064 0.376 MDNHIPMFINSINFIFFFFFIIITTFPTQSHSQPQKPPQPVFDYDYSSCRDIKNSYNCGNITNISYPFWGHNRLLPCGAGYPFQLYCNKNNITTIQLSSQNFTVLDINTKEHTIKLQKQNLYQDLCSPQFVEYFLPPTLFHLLPTLNNITVYYNCSSQYSYISPCGPRSQNPSFFYVGGDENDVLKSCKGHIQVPVGTEFPMDKNKSGYFEREVLESAWDKEFEVVYIVDDDECFKCLGRNEGDCEWKNNRDIVKSCYIDYCPDGSIDYLSHCPHKNPWNWKRKVIIALPAAMIGALAMITAIYFCKRRKNISYAKSYVQSRSLSTDPSSKDVESGSQYFGGSQNFGVQHFTYSELEEATNYFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQTKHGKLSWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINRIQNQALHEIVDPNLGYDSDPKVKKMINAIGELAFQCLQSSKDLRPCMDDVLETLLDVQSDGKHKSKPEVMDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03739 687 SMART serkin_6 363 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03739 687 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Trre4g03739 687 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 682 IPR044652 GO:0004672
Trre4g03739 687 Gene3D Transferase(Phosphotransferase) domain 1 440 651 - -
Trre4g03739 687 ProSiteProfiles Protein kinase domain profile. 363 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03739 687 Pfam Wall-associated receptor kinase galacturonan-binding 55 116 IPR025287 GO:0030247
Trre4g03739 687 SUPERFAMILY Protein kinase-like (PK-like) 345 640 IPR011009 -
Trre4g03739 687 MobiDBLite consensus disorder prediction 671 687 - -
Trre4g03739 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Trre4g03739 687 FunFam Wall-associated receptor kinase-like 20 440 648 - -
Trre4g03739 687 Pfam Protein kinase domain 366 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03739 687 MobiDBLite consensus disorder prediction 665 687 - -
Trre4g03739 687 Gene3D Phosphorylase Kinase; domain 1 340 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03739 Trre-Chr4 45139118 45144804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03739 47 687 Receptor kinase-like Gene Family AT1G25390 43.134 2.01e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre4g03739 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03739 - - mtr:25496819 761.911