Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03731 ATGGAAATTTTCAAATTCTTCTTCTACTTCATTAATCTTCTCTTTGCTTTCATCTTAACATCATCATCTTTAGCAATTGATCCTTATTCACAAGCACTCCTAAGTCTAAAATCTGAGCTTATAGATTATGATAATACCTTGCATGATTGGGTGGTGGCATCAAATGGAAGTTCCTATGCATGTTCTTGGTCTGGTATAAAGTGTAACAAGGACAAAATTGTAATTTCAATAGACCTTTCCATGAAGAAACTTGGAGGTATACTATCAGGTAACCAATTAAGTATCTTCACAAATGTTACTGATTTCAACATAAGCTATAATTTCTTTTCTGGTAAACTTCCACAAGAAATTTTCAACCTCACAAGTTTGAAAAGCTTGGATATAAGCAGAAACAATTTCTCAGGTCAATTCCCAAAAGGAATTCCTAAACTCAAAAATTTAGTTGTACTTGATGCTTTTAGCAACAGCTTTTCAGGTCAATTACCAGCTGAATTTTCAGAATTGGATAATCTTAAGATTCTTAATCTAGCTGGTAGTTACTTCAGTGGAACAATTCCATCTGAATATGGTTCTTTCAGAAGTCTTGAGTTTCTTCATTTAGCTGGAAATTCTCTATCTGGAAGTATACCTTCAGAACTCGGTAACCTCGAAACAGCGACACATATCGAGATTGGTTACAACTTTTATCAGGGTTTCATTCCACCTCAACTAGGTAATTTGAGTCAGCTTCATTATCTTGATATAGCAGGTGCAAATCTATCTGGATCAATTCCAAAGGAATTTTCCAACCTCACAAGTTTACAATCACTTTTTCTGTTCAGAAACCAACTTACAGGTTCAATACCTAATGAGTTCAGCAATATTAAACCTCTCACAAATTTAGATCTTTCTGATAATTTCCTTTCAGGGTCAATTCCCGAAAGCTTTTCCGAGCTAAAAAGCTTAAGACTTCTTAGTCTTATGTATAATGACATGAGTGGAACTGTTCCTGATGAGATTGCAGAACTAAGTTCATTGGAAACTTTACTCATTTGGAATAATCGCTTCTCTGGATTACTTCCGAAGAGTTTAGGTAAAAACTCGAAACTCAAGTGGGTGGATGTGTCCACAAACAAATTCAATGGCAGTATACCACCGGACATTTGTCGAGGTGGAGTACTGTCGAAGCTAATCCTGTTTTCAAACAAATTCACAGGTAGTCTTTTCTCGATCTCGAATTGTTCTTCCCTTGTTCGACTTCGTCTAGAAAATAATTCATTCTCCGGTGAAGTCTCTTTAAAATTCAGCCATCTTCCTGATATCACATATGTTGATTTGTCATGGAACAAATTTGTTGGTGGGATTCCCTTGGATATTTCTCAAGCTACTCAATTGGAGTATTTTAATGTCTCTTATAATAACCAATTAGGAGGCATAATCCCTACATTAATATGGTCTTTGCCGCAACTTCAAAATTTCTCGGCATCTTCTTGTGGTATTTTAGGCATTCTTCCTTCATTTGACTCTTGCAAATCAATTTCAACAATTGATCTTGGTAGAAACAACTTATCTGGAACAATCTCAAAAAGTGTTTCGAAATGTCAAGCTCTTGTGACAATCGAATTGCCTGACAATAATATGACGGGTCAAATACCTGAGGAGCTCGCAAGTATCCCTATTCTTGAAATCGTAGATTTATCTAACAACAAGTTCAATGGCCCTATACCTGAAAAGTTTGGTAGTTTATCAAGTTTACATCTTCTCAATGTGTCTTTCAACAATATCTCAGGTTCAATACCAAATACAAAGACATTTAAAATAATGAATGAAAGTGCATTTGTTGGAAACTCGGAGCTATGCGGAGCACCTCTAAGACCATGTTTTGAGAGAGTAGGAATATTAGGTAGCAAAGGAGCTCGGAAGCTTACACATATTTTGTTACTCTCTATAGGGCTGCTAATAATCCTTCTGGTATTGGCTTTTGGAATACTTCATTTCAGAAAGGAATTTAAAAGTCAATGGAAAATGGTTTCATTTGTTGGACTTCCTCAATTCACAGCGAATGACGTCTTGACAAGCTTCAGTGTGGTTGCCACGGAACATACACATATTCTGTCATCACCGTCACCTGTAGTTACAAAGGCGGTTCTTCCAACAGGTATAACAGTATTAGTCAAGAAGATTGAATGGGAAAATAGGAGCATTAATGTGGTGTCAGAATTTATAACGAGACTAGGAAATACAAGGCACAAGAATTTAATCAGATTGTTGGGTTTTTGCCACAATCAGCAACTAGTTTACCTTTTGTATGATTACTTACCAAATGGAAACTTGGCCGAGAAAATTGGAATGAAATGGGATTGGTCAGCTAAATTCAGAACAGTGGTCGGAATTGCAAGAGGACTGTGCTTTCTTCACCATGAATGTTACCCGGCTATACCGCATGGAGACTTGAAATCTAGCAATGTTGTATTCGATGAAAATATGGAACCCCATTTGGCTGAATTTGGGTTTAAACAAGTCTTACAGTTGAGCAAATGCGCATCTCCGACTAAAACTATGCAGGAAACAGAATACAATGAAGTAATGAAAGAGGAACTCAGCAATGATGTCTACAATTTTGGGAAGATGATTCTAGAAATTTTAACTGGCGGAAAGTTGACAAGTGCAGCAACCAACATTCACAGCAATTCACAGGAGGTTCTTCTAAGAGAAGTTTACAATGATAACGAAGTGACCTCTGTCGGTTCAATGCAAGAGATTAAACAGGTTATTGAGGTTGCTATGCTTTGCACGAAAAGCAGATCATCCGATCGTCCATTCATGGAAGATGTTCTGGAGCTTCTGTCAGGGTTAAAATGTTTAGAAAATGATGGAAGTTCTAAATAA 2868 0.3668 MEIFKFFFYFINLLFAFILTSSSLAIDPYSQALLSLKSELIDYDNTLHDWVVASNGSSYACSWSGIKCNKDKIVISIDLSMKKLGGILSGNQLSIFTNVTDFNISYNFFSGKLPQEIFNLTSLKSLDISRNNFSGQFPKGIPKLKNLVVLDAFSNSFSGQLPAEFSELDNLKILNLAGSYFSGTIPSEYGSFRSLEFLHLAGNSLSGSIPSELGNLETATHIEIGYNFYQGFIPPQLGNLSQLHYLDIAGANLSGSIPKEFSNLTSLQSLFLFRNQLTGSIPNEFSNIKPLTNLDLSDNFLSGSIPESFSELKSLRLLSLMYNDMSGTVPDEIAELSSLETLLIWNNRFSGLLPKSLGKNSKLKWVDVSTNKFNGSIPPDICRGGVLSKLILFSNKFTGSLFSISNCSSLVRLRLENNSFSGEVSLKFSHLPDITYVDLSWNKFVGGIPLDISQATQLEYFNVSYNNQLGGIIPTLIWSLPQLQNFSASSCGILGILPSFDSCKSISTIDLGRNNLSGTISKSVSKCQALVTIELPDNNMTGQIPEELASIPILEIVDLSNNKFNGPIPEKFGSLSSLHLLNVSFNNISGSIPNTKTFKIMNESAFVGNSELCGAPLRPCFERVGILGSKGARKLTHILLLSIGLLIILLVLAFGILHFRKEFKSQWKMVSFVGLPQFTANDVLTSFSVVATEHTHILSSPSPVVTKAVLPTGITVLVKKIEWENRSINVVSEFITRLGNTRHKNLIRLLGFCHNQQLVYLLYDYLPNGNLAEKIGMKWDWSAKFRTVVGIARGLCFLHHECYPAIPHGDLKSSNVVFDENMEPHLAEFGFKQVLQLSKCASPTKTMQETEYNEVMKEELSNDVYNFGKMILEILTGGKLTSAATNIHSNSQEVLLREVYNDNEVTSVGSMQEIKQVIEVAMLCTKSRSSDRPFMEDVLELLSGLKCLENDGSSK 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03731 955 SUPERFAMILY Protein kinase-like (PK-like) 704 942 IPR011009 -
Trre4g03731 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Trre4g03731 955 ProSiteProfiles Protein kinase domain profile. 667 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 766 950 - -
Trre4g03731 955 Gene3D Phosphorylase Kinase; domain 1 692 763 - -
Trre4g03731 955 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Trre4g03731 955 PANTHER UNNAMED PRODUCT 13 165 - -
Trre4g03731 955 FunFam Leucine-rich repeat receptor-like protein kinase 26 187 - -
Trre4g03731 955 SUPERFAMILY L domain-like 305 616 - -
Trre4g03731 955 FunFam Leucine-rich repeat receptor-like protein kinase 188 279 - -
Trre4g03731 955 SUPERFAMILY RNI-like 76 398 - -
Trre4g03731 955 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515
Trre4g03731 955 Gene3D Ribonuclease Inhibitor 291 624 IPR032675 -
Trre4g03731 955 Pfam Protein tyrosine and serine/threonine kinase 712 941 IPR001245 GO:0004672|GO:0006468
Trre4g03731 955 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Trre4g03731 955 Gene3D Ribonuclease Inhibitor 185 290 IPR032675 -
Trre4g03731 955 Gene3D Transferase(Phosphotransferase) domain 1 764 953 - -
Trre4g03731 955 SMART LRR_typ_2 336 359 IPR003591 -
Trre4g03731 955 SMART LRR_typ_2 264 287 IPR003591 -
Trre4g03731 955 SMART LRR_typ_2 575 600 IPR003591 -
Trre4g03731 955 SMART LRR_typ_2 192 216 IPR003591 -
Trre4g03731 955 SMART LRR_typ_2 120 144 IPR003591 -
Trre4g03731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 678 765 - -
Trre4g03731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 309 622 - -
Trre4g03731 955 SMART serkin_6 704 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03731 Trre-Chr4 45056637 45059748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03731 8 943 Receptor kinase-like Gene Family AT5G51350 52.505 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g03731 PK_Tyr_Ser-Thr 1.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03731 - - aprc:113852384 1401.73