Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03730 ATGCCAATTTTCTCGTCTTTATGTCAATGTTTTTCCCCTGACGAAAAAACTAGAAAGGAAAACAACCCTTCATTTCCAAAGGGTTTTGAGAAGAATGGTAGAAATTCGATGACAGTGAGTTCTAAGAAGCTGATTAGAAATGATGATCAAATTGTGTCTGTTGATTCAAAGGTCGTAAACAAATGTAATGAATCAGTTCTTGTGAATGTTAATTCTGAGTTACCGAATAGTCATGGTGGTCAATCAATGTTGATTGATTCTGAGGTGCAGAATAGCCAATGCGATATTAGTGAGAGTGAGATATTTAAGTATTCTGAACTTGAAGAAGCTACCGATAAATTTGACACTAGTAGAATACTTGGGACTGGAGGCTATGGAACAGTTTACTCTGGAACACTTAAAGATGGGCGTCTTGTCGCAATAAAGCGCTTGCACGAAGACAAGTTCAAGATCTTAAGGTTAAATGATAAGAAGCTTGAAGAGGAGACAGTAAGAAAGTTCATCAATGAAGTTTCAATGTTAACTCGCATGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCTCCTCGAACCCGTGAACTACTTCTCGTGCAAGAATATGTTCCCAATGGAACCTTGGCTCGTCGTCTTCGTAAAGATACCTTGCCGTGGTCAACTCGACTAAATGTTGCGGTACAAACTGCAAGTGCATTAGCTTATCTCCATGCTTCCAATGTTATCCACCGTGACGTGAATACCAGTAATATTCTACTTGACATAAGTTTGAATGCTAAAGTTGCAGACTTTGGATTGTCACGCCCTGTCCCGCATGGTGCTACACACATCACAACCGATCCTGCAGGAACTACAGGTTATATTGATCCGGAGTATTACGAACATTGTCATCTTTCGGATAAAAGTGATGTGTACAGCTTTGGAGTGATATTGGTCGAGTTGATTTCATCTTTGCCCGCATATAGTGAGGATGAAAAACAACCTTTTCTTTCGGATTTCGCTATGGATAAAATCCTCAACGGACAACTCGAAAAGCTTGTCGACCCGAATCTTGGATTTCAATCAGACAATTGGATAAGTGAAACAGTAAGTGCAGTGGCAGAGTTGGCATTTGGCTGTTTACAACCTCAAAGAAACATGAGACCTTTCATGAGTGAAGTGTTGAACACTCTTGAGAGCATAAAAAGTGGAAGCTCTCAAAAAGCTGTTAAATGTGGTTCAAATCATTGTTATAATCCTACTAAAGTTCACATTGTGTCACGTTTGCCTGATGATTATTTTGAGAAAAAATAG 1293 0.3944 MPIFSSLCQCFSPDEKTRKENNPSFPKGFEKNGRNSMTVSSKKLIRNDDQIVSVDSKVVNKCNESVLVNVNSELPNSHGGQSMLIDSEVQNSQCDISESEIFKYSELEEATDKFDTSRILGTGGYGTVYSGTLKDGRLVAIKRLHEDKFKILRLNDKKLEEETVRKFINEVSMLTRMRHENLVQLYGCTSPRTRELLLVQEYVPNGTLARRLRKDTLPWSTRLNVAVQTASALAYLHASNVIHRDVNTSNILLDISLNAKVADFGLSRPVPHGATHITTDPAGTTGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAYSEDEKQPFLSDFAMDKILNGQLEKLVDPNLGFQSDNWISETVSAVAELAFGCLQPQRNMRPFMSEVLNTLESIKSGSSQKAVKCGSNHCYNPTKVHIVSRLPDDYFEKK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03730 430 SUPERFAMILY Protein kinase-like (PK-like) 96 392 IPR011009 -
Trre4g03730 430 MobiDBLite consensus disorder prediction 15 36 - -
Trre4g03730 430 Gene3D Phosphorylase Kinase; domain 1 85 202 - -
Trre4g03730 430 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 74 402 IPR044652 GO:0004672
Trre4g03730 430 Pfam Protein kinase domain 115 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03730 430 ProSitePatterns Protein kinases ATP-binding region signature. 120 142 IPR017441 GO:0005524
Trre4g03730 430 ProSiteProfiles Protein kinase domain profile. 114 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03730 430 Gene3D Transferase(Phosphotransferase) domain 1 203 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03730 Trre-Chr4 45041915 45043902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03730 91 396 Receptor kinase-like Gene Family AT1G25390 50.938 2.87e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre4g03730 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03730 - - tpra:123887372 743.036