Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03720 ATGCCTGTTATAACAGGACACATGAAATGGAGAAGACCCAGAAACAAATCAAGACACCCCAATTCAGAAACTGATCCAAGTTCACAACTTTCTTCTTTAATCGAATCCACTTCTTGCAAATCCACAATCACCACTCTCTTTTCCACTTTCTCAAACAACACATCCAATGAAACCACACATGACAGTAACCAAAACAGAACAAAAAAGAACAACAACAAAAACATTAACAATAGTAACTTTTCTGCAGCAACCTTCAGAGGACTCGGCTGCACAGCCGGTACATCACAACAGGTGTCTGTACCGGCTGTGATTCGATCCTCTGTAGATTGGCAAGGGAAAAAGAATAGAATAAAGAAACATAGAAAGAACAGCAATAAAACATGTCATGGTGTTGATGATGTGGATTTTCAGGATGTTTGGTGTGGACCAGGAATTGGGTTTTCATCTGATGTTGCTGATGTTTCTGTGGATTGTGTTGTGGCAAGAAATAATGTTTCTTCAAGAGGAAAACTTGATAATGGGGAAAGAGTAACACATAGGGAGCGTTCATCTTATTTTGGAAGGAGAAATTTAAATCAAGAAAATTTATCATTTTTAGATGATGATTCTGATGTGTTCACATCACGTCATGGATTAGAATCTTTTGGCAATAGTAGATTCTATAGAAATTCTTCACGTGTTTCATCTGATGGTCTTCCTGAGATAATGATAATTCAAGGAGCAAGATTAATGGGGGCACAATTAAGTTCACGTGACCAATTTAGAGATTGGAGACTCGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTAGGTGAAAGAATTGGCTATGTGAAAACAGGACTTAAAGAAGATGAGATGAAACACAACATAAAGAAAATGAAGTTTTTGATTTCAAAAGATACACTAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATTAAAAGATGAATTGGGGAGATTAAAGTGTGAACATTGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGTCCAGTATGTAAGCAAGAAGTCGTGGTTCGACGCTGA 1083 0.3666 MPVITGHMKWRRPRNKSRHPNSETDPSSQLSSLIESTSCKSTITTLFSTFSNNTSNETTHDSNQNRTKKNNNKNINNSNFSAATFRGLGCTAGTSQQVSVPAVIRSSVDWQGKKNRIKKHRKNSNKTCHGVDDVDFQDVWCGPGIGFSSDVADVSVDCVVARNNVSSRGKLDNGERVTHRERSSYFGRRNLNQENLSFLDDDSDVFTSRHGLESFGNSRFYRNSSRVSSDGLPEIMIIQGARLMGAQLSSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKHNIKKMKFLISKDTLKHQIDKKCTICQEEYELKDELGRLKCEHCYHFQCIKQWLVLKNFCPVCKQEVVVRR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03720 360 SUPERFAMILY RING/U-box 311 358 - -
Trre4g03720 360 Pfam Ring finger domain 311 353 IPR001841 -
Trre4g03720 360 MobiDBLite consensus disorder prediction 50 78 - -
Trre4g03720 360 SMART ring_2 312 352 IPR001841 -
Trre4g03720 360 MobiDBLite consensus disorder prediction 1 34 - -
Trre4g03720 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 358 IPR013083 -
Trre4g03720 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Trre4g03720 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 356 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03720 Trre-Chr4 44936764 44943432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03720 4 267 C3H Transcription Factor Family AT1G73760 37.793 1.57e-41 145