Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03713 ATGGATCCACAACTTCTTACCACGGCTGCTCCACCTAATATCGTCCAACAAAATTATCCTGAATCGGTAGAGTCTTTATCATCACCACCACCACCACAACCACCACCACGATCACGTGAAATAATGAACGATGAGTCTTTACCTAATGTCCCCGGATCCAAGCTTCGACTCATGTGTAGCTATGGCGGACACATTATGCCGCGCCCGCATGATAAATCCTTGTGTTACGTTGGTGGTGACACGCGAATTGTGGTGGTTGACCGGAGTGCTTCCCTGAGAGATCTTTGTTCGCGCCTTTCGAGAACAATTCTAAATGGAAGGCCCTTTACTCTAAAATACCAGCTTCCAAATGAAGATCTTGATAACCTCATCACAGTGACATCAGATGAAGATCTTGACAATATGATCGAAGAATACGATCGAATAGCATCTTCTACAATGAAACCTTCATCTTCAAGACTCAGAGTGTTTCTATTCTTCACAAAACCAGATTCTACTCTTTCAATGGGATCTCTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAATCCTCTCAAGGGGTGTGTCTGATTCAGCAGGAGATTCTTTTGTGAATCTTGATAATGTTGCTGCTAGTGATTCAAGTAACAACTTGGAATCTCAAAGTGTAGCAGCAGAGTCAATGAATCTCCTTGAAGACATCAACAATAACAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTTCAAGTGGTGCACCTATGCTTGAGAATAGTCCATCTTCTTCTTCTTTGTCTCCTTCAATAGCTAATTTACCTCCAATTCGTGTTCGTGTCGACGAAAACGGTGGTAACCGGATTCAACAAGAGAATAAAGTTGTAATGAAGCAAGATGGTGGCTATGTTGTTTCTTATGCTAATGTGGCTATGGCTGCAATTCCTTCAGCTGGAGTTGTGACTACTACTGCTACTGTTAGTGATGTTAATTTGAATAATAGGGCTGTTTCTGATGATGAGAGATCAGATTATGGAGGAGTAATTGGATCTCGAAAACCGCCTTTGCCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGGGTTGAGTGTTCCTTCACCGGATTCAGTCAGAAGTGATAGTAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATTGTTTATCATCAAGAACAAGTCCAACCTACCAATATAGACAACAAAGCTCAAGATTCTAGTTACATGTTACCACCACAAATGGATCAAAATCAACAACTTCAACAACCACCACAACAACAACAACAATTTGTTCATTCCAACACTCACTATATCCACCATCCTACATCCACAAATCAAGTTCCAATCTCATCATACTACCAAGTTTATCCCCCACAATCACAACAACAACTTCACAATCCAATTGGTCAACAACAATATCCAATTTATGTAATGCCTATTGGATCAACACAACCATACAATATGACATTACAACATAATATAAATGACCCTAATGTTGTAGCTTCTAGTAGGCCAATACTACCTCAAAGTGGTACTCCACCAATTTACCCTAATAAATCACCTAACCCTAATGTGGCAACAAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTTTGCCTCAATTTCATCATCAACCACAACATCCTATTAATGTAGCTCCTTCTAGTGGTGGTGCTAATTATGGTTATGAATATGGTGGCAGTGTGGAAGGTCAAGTGTACTATACTCAACAACAAACTAATGCTCCATTGGTTACTCAGTATCAATCCATGACTCCTGCAGCTGCTGCAGCAGCATTATCAGATGCTTCCAATCAAATTCCTGCGGATAATGCTCAGCAGCCAAATAGAACTTCGCAACCAGTATAG 1911 0.3987 MDPQLLTTAAPPNIVQQNYPESVESLSSPPPPQPPPRSREIMNDESLPNVPGSKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSTMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVAASDSSNNLESQSVAAESMNLLEDINNNNNNVKNVFDVVNVSSGAPMLENSPSSSSLSPSIANLPPIRVRVDENGGNRIQQENKVVMKQDGGYVVSYANVAMAAIPSAGVVTTTATVSDVNLNNRAVSDDERSDYGGVIGSRKPPLPLQLVQPRTSGGGLSVPSPDSVRSDSSSIASTNSFSKIVYHQEQVQPTNIDNKAQDSSYMLPPQMDQNQQLQQPPQQQQQFVHSNTHYIHHPTSTNQVPISSYYQVYPPQSQQQLHNPIGQQQYPIYVMPIGSTQPYNMTLQHNINDPNVVASSRPILPQSGTPPIYPNKSPNPNVATNSTFVQVPSNQFQQQYVGLPQFHHQPQHPINVAPSSGGANYGYEYGGSVEGQVYYTQQQTNAPLVTQYQSMTPAAAAAALSDASNQIPADNAQQPNRTSQPV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03713 636 MobiDBLite consensus disorder prediction 1 49 - -
Trre4g03713 636 MobiDBLite consensus disorder prediction 409 434 - -
Trre4g03713 636 SUPERFAMILY CAD & PB1 domains 70 170 - -
Trre4g03713 636 CDD PB1_UP2 58 159 - -
Trre4g03713 636 Gene3D - 74 160 - -
Trre4g03713 636 MobiDBLite consensus disorder prediction 618 636 - -
Trre4g03713 636 MobiDBLite consensus disorder prediction 364 385 - -
Trre4g03713 636 MobiDBLite consensus disorder prediction 337 385 - -
Trre4g03713 636 MobiDBLite consensus disorder prediction 9 24 - -
Trre4g03713 636 ProSiteProfiles PB1 domain profile. 54 159 IPR000270 GO:0005515
Trre4g03713 636 PANTHER OS05G0427100 PROTEIN-RELATED 19 466 - -
Trre4g03713 636 Pfam PB1 domain 70 159 IPR000270 GO:0005515
Trre4g03713 636 SMART PB1_new 69 159 IPR000270 GO:0005515
Trre4g03713 636 MobiDBLite consensus disorder prediction 611 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03713 Trre-Chr4 44883448 44887273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03713 54 188 MAP Kinase Kinase Kinase AT5G57610 44.853 2.00e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03713 - - cam:101514979 838.95