Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03673 ATGGTTGTTGTTCCTTCTTCTCTTCAAATATCCAAACGAAGAAGAATCACCAACTTTTATTCCATGGCAACAATTGCAGAGATGCATGAAAAATTTGGGCAAGAGATTCGTGTTTTTGAAACATTATCACTTTCTGCATCACCAAATGCTGCAGAAAACAAAGAAGAGGAGCCTGAAGAGTTCTACGAGTTCACAGCTGAAGATTATTACAAAATTTTGGCTACTAAAAAAGATGATAAATTTCTGAAGACTCGAAAACTCCGAGAAGCAGATGCAGCGGCTCGCAGGTCAAGAATGACCAAGGCTGGAATTAGAGTTCGCTTCCCTGATAATCATACATTGGAAGCTACTTTTCAACCTTCGGACACTATCCAGAGTTTAATTGATCTCCTGAATAAAGTGATTGCACAACCAGAGAAGCCATTTTACTTATATACTACTCCGCCGAAAAAGCTGATCAAAGATGTATCTCAGGATTTCTATGCTGCTGGATTTTGTCCTGGAGCCATCGTGTACTTTTCATACGATGTTTCAAAAGGTGATGGAAGCGATGATGGCCCTTACCTACGAGAAGAGGTGATGTCTTTGAAGAGTGCATTAGATCAAGGTCAGCCGTCTGAGCCATTACAATCCGAGCCAGTGTCTGCTGAGCCGGTCGTGCCAGCACCTGCTGTTCAAGAAAGAAAACCGGCCGAGAAAAAGATTGTTAAGCCAAAGTGGTTGAAAATGTAA 732 0.4153 MVVVPSSLQISKRRRITNFYSMATIAEMHEKFGQEIRVFETLSLSASPNAAENKEEEPEEFYEFTAEDYYKILATKKDDKFLKTRKLREADAAARRSRMTKAGIRVRFPDNHTLEATFQPSDTIQSLIDLLNKVIAQPEKPFYLYTTPPKKLIKDVSQDFYAAGFCPGAIVYFSYDVSKGDGSDDGPYLREEVMSLKSALDQGQPSEPLQSEPVSAEPVVPAPAVQERKPAEKKIVKPKWLKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03673 243 Gene3D - 37 172 - -
Trre4g03673 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 3 243 IPR044232 GO:0032984|GO:0051117
Trre4g03673 243 ProSiteProfiles UBX domain profile. 97 173 IPR001012 GO:0005515
Trre4g03673 243 Pfam UBX domain 100 156 IPR001012 GO:0005515
Trre4g03673 243 Coils Coil 242 243 - -
Trre4g03673 243 MobiDBLite consensus disorder prediction 197 243 - -
Trre4g03673 243 SUPERFAMILY Ubiquitin-like 79 173 IPR029071 -
Trre4g03673 243 MobiDBLite consensus disorder prediction 227 243 - -
Trre4g03673 243 CDD UBX2_UBXN9 104 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03673 Trre-Chr4 44307150 44310724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03673 30 120 C2H2 Transcription Factor Family AT2G01650 35.789 2.91e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03673 K15627 - gmx:100792947 302.367