Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03663 ATGGCTGGAGGTGTTATTCAACAGTTATTGAGGAGGAAACTCCAATCTCATTCTCCTAATCCTTTATCTATGTCATCCATTATCACAAAGAATGATGGTGCTGGCTCTACAAGCAGCGGATCCTTAAGAGCCCTTGCATTAATTGGAGCTGGTGTATCAGGGTTATTGAGTTTTGCGACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCTGCTCCAAGCTATCCATGGCCTCACGAGGGCATTCTCAGTTCATATGATCATGCTTCAGTTCGTCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGTCATTCTATGTCTTTGGTATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGAGGAGGTAAAGGCTATGGCTGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCCGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAAAACTATGTGTTTGCTCTTCTTACAGGTTACCGTGACCCCCCTGCTGGTGTTGTGATTAGAGAAGGACTACACTATAATCCTTATTTTCCTGGCGGAGCCATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAATACGAAGACGATGTCCCTGCTACAGAATCTCAGATGGGAAAAGATGTTGTATCATTTTTGACTTGGGCTGCAGAACCTGAAATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTCGTACTTTCATTGGCGTTACTTCAAGCTGCATATTATCGTCGCCTTCGATGGTCTGTTATTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAA 924 0.4405 MAGGVIQQLLRRKLQSHSPNPLSMSSIITKNDGAGSTSSGSLRALALIGAGVSGLLSFATTASADEAEHGLAAPSYPWPHEGILSSYDHASVRRGHQVYTQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVVIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDDVPATESQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVIKSRKLVLDVVN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03663 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Trre4g03663 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 FunFam Cytochrome c1, heme protein 67 262 - -
Trre4g03663 307 Gene3D - 263 306 - -
Trre4g03663 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 PANTHER CYTOCHROME C1 34 305 IPR002326 GO:0009055|GO:0020037
Trre4g03663 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
Trre4g03663 307 FunFam Cytochrome c1, heme protein, mitochondrial 263 307 - -
Trre4g03663 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Trre4g03663 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03663 Trre-Chr4 44059718 44064236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03663 1 307 Chloroplast and Mitochondria Gene Families AT3G27240 84.365 3.77e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03663 K00413 - gmx:100803087 560.451