Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03653 ATGAGGTACTTTTATTTTCATCTTTTAGTTCTTTCATGGTGTTTATTGTTCATCTCAAATACTCATGAGCTAGAACAAGATCAAACACAAGCTTTGTTACAATTAAGAACTTATTTAGAACATCCTTCTTCATTACAAATTATGGAAAATTACAATAATGACCTTTGTTACCTTCCTTTATCTTCAAATTTTAGCATTAAATGTGAAGATAATTCAATAATTGAGCTCAAAATGTTTGGTGACAAATCTATAAAACCATTAAGTTTTAATGGATTTGCAATTCCAAATCAAACACTATCCAAAAATTTCTCAATTGATTCATTTTTCACCACATTGACAAAGTTGAAAACCCTTAAGGTTCTAACTTTGGTTTCATTAGGAATTTGGGGGAAACTTCCTAATCAAATTCATTCTCTCACTTTTCTTCAAATTTTGGATTTAAGCTCAAATTTCCTTTTTGGCACAATTCCACCAAAAATTTCAACAATGGTAAAGCTTCAATCACTAACACTTGATGAAAATTATTTCAACACAACTATGCCTAATTGGTTTGATTCTTTGTTTAATCTAAGTATCTTGAGTTTGAAGAAAAATCACTTAAAGGGTTCATTTCCATTTTCACTATGCAAAATCAAGAAACTTCAAGTTATATCTTTCTCACAAAATGAACTCTCTGGTGAATTACATTCTCTCAATACTCTCGATGGTTTACATGTTTTGGATTTGAGAGAAAATCGTTTCGAATTTGAACTACCGGTTCTACCGAAATTTGTGGTCACGGTTTTGTTAAGCAATAACTCGTTTTCGGGAGAGATACCGAAGAAGTTCGGAGAATTGAATCATCTTCAACATTTAGACCTTTCTTCGAATCGTCTTAAGGGCACACCTCCATCGGCTTTGTTCTCTTTGTCGAGTTTAAGTTACTTGAATCTAGCTAACAATGTGCTAAGTGGAGAATTTTCGGATAAACTTCATTGCGGCGGAAAACTTGGTTATGTTGATATTTCTAGCAACAAGTTAAGTGGTTTACTTCCTTCTTGTTTGGTGAATAGTTCTAATGGTAGAGTTGTTAGATATGCTAGAAATTGTTTATCTTTTGAGTATAAGAATCAACAAAGAGGTTCTTATTGTAAGGAATCGGGTTTAAGATGGAAGAAATTCAAGGAATGGGAAGTGATTGCATTAGGGGCTATTATTGTTGGATTTGTTCTTGTGGTTTTGGTGTTTGGTGTTTTGTTATGTAAAAAATGTGATTTAAGAAAGAAAAATAGACATGATTTGTTGCCGAATTTTGTTCAAGATAAGTCCGCAGCCGGTGTTTCATCAGAAGTTCTCGCAAATGCAAGATTTATTTCACAAGCAGTGAAGCTAGGGACACAAACTACTCCAAACTGTCGACAATTTTCAATTCAAGAGTTGAACGAAGCCACCAAAAACTTTAGTTTGTCAACTTGTATTGGTGATGGCTCCATAGGGAAGCTATATAAAGGTAAACTAGAGAATGAATGTTATGTGATGATAAGAACTTTGGTTCTGTCAAAGAAATGCTCAATTCAAAATCTTAAAGCTAAGTTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTTAGTCTTTTGGGTCATTGCATTGATGGTGGTGTACAAGATGATTCAAGCACCCAAAAACTTCATCTTGTATATGAATATGTACCAAATGGTGATTATCATACTCATCTATCAGAATATTCTGCAGAGAAAGCACTTAAATGGCCTGATAGACTGGCGATTTTGATCGGAGTTGCAAAGGCAGTTCATTTCTTACATACCGGTGTTATACCAGGATGTTTTAGCAACCAATTGAAGACAAAGAGTGTGTTACTTGATGAACACTGTATTCCAAAACTAAGTGACTATGGTATGTCCATCATCAAAGAAGATATTGAAAAGTTTGAGACAAAGGGTGAGAAGAAATCAAAATCATGTCAAAGTACAAAAATGGATAATGATGTTTACAATTTTGGATTCATAATGTTGGAATCACTTGTTGGACCCATTACATGTGACAAAGGTGAATCATTTTTCCTAAATGAAAAGGCATCTTTTGGAAGTCAAGATGGAAGAAGAAAGATTGTGGATCCAATAGTGTTGACAACTTGTTCTCAAGAATCATTATCAATTGCAATATCTATAACAACCAAATGTATATCTCAAGATTCTTCATCTCTTCCTTCTTTTGAAGATGTTTTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCAGATTAA 2292 0.3346 MRYFYFHLLVLSWCLLFISNTHELEQDQTQALLQLRTYLEHPSSLQIMENYNNDLCYLPLSSNFSIKCEDNSIIELKMFGDKSIKPLSFNGFAIPNQTLSKNFSIDSFFTTLTKLKTLKVLTLVSLGIWGKLPNQIHSLTFLQILDLSSNFLFGTIPPKISTMVKLQSLTLDENYFNTTMPNWFDSLFNLSILSLKKNHLKGSFPFSLCKIKKLQVISFSQNELSGELHSLNTLDGLHVLDLRENRFEFELPVLPKFVVTVLLSNNSFSGEIPKKFGELNHLQHLDLSSNRLKGTPPSALFSLSSLSYLNLANNVLSGEFSDKLHCGGKLGYVDISSNKLSGLLPSCLVNSSNGRVVRYARNCLSFEYKNQQRGSYCKESGLRWKKFKEWEVIALGAIIVGFVLVVLVFGVLLCKKCDLRKKNRHDLLPNFVQDKSAAGVSSEVLANARFISQAVKLGTQTTPNCRQFSIQELNEATKNFSLSTCIGDGSIGKLYKGKLENECYVMIRTLVLSKKCSIQNLKAKLDLLSKLQHPNLVSLLGHCIDGGVQDDSSTQKLHLVYEYVPNGDYHTHLSEYSAEKALKWPDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTKSVLLDEHCIPKLSDYGMSIIKEDIEKFETKGEKKSKSCQSTKMDNDVYNFGFIMLESLVGPITCDKGESFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISQDSSSLPSFEDVLWNLQYAAQVQATADADQKSD 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03653 763 Pfam Leucine rich repeat 260 316 IPR001611 GO:0005515
Trre4g03653 763 Gene3D Phosphorylase Kinase; domain 1 441 563 - -
Trre4g03653 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 763 - -
Trre4g03653 763 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 102 747 - -
Trre4g03653 763 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 150 228 - -
Trre4g03653 763 Gene3D Ribonuclease Inhibitor 258 370 IPR032675 -
Trre4g03653 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 443 563 - -
Trre4g03653 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 258 382 - -
Trre4g03653 763 Pfam Protein tyrosine and serine/threonine kinase 482 673 IPR001245 GO:0004672|GO:0006468
Trre4g03653 763 ProSiteProfiles Protein kinase domain profile. 480 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03653 763 Gene3D Ribonuclease Inhibitor 25 257 IPR032675 -
Trre4g03653 763 SUPERFAMILY L domain-like 43 367 - -
Trre4g03653 763 Gene3D Transferase(Phosphotransferase) domain 1 564 763 - -
Trre4g03653 763 ProSiteProfiles Leucine-rich repeat profile. 281 302 IPR001611 GO:0005515
Trre4g03653 763 PRINTS Leucine-rich repeat signature 303 316 - -
Trre4g03653 763 PRINTS Leucine-rich repeat signature 282 295 - -
Trre4g03653 763 SUPERFAMILY Protein kinase-like (PK-like) 461 746 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03653 Trre-Chr4 43888107 43892524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03653 8 694 Miscellaneous Gene Families AT5G14210 53.515 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre4g03653 PK_Tyr_Ser-Thr 3.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03653 - - gmx:100799183 1079.32