Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03624 ATGGAAGAGGAATCAATGAAAAAGTGTTGGAGAAAAGAAGTAGCCGAAAATCTTCAAAGACTACACTCTCTCTTGTTCGGCGTTGAACGTGCCCTAGATCAACACAATCGCGATTTCTCTTCCGCTTACATTCTCTCTCTTCGTCTCATCGGTTTCATTGATTCTCGTTCTCAATCAGAAATCGATCAAGTTTTTCTTCAACAGACTCGTCGTCAAGCTTTAACCTATCTTCATACAGCTAAACAATCTCTCACTCCTATCATTGATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCTCCAGGACCCATTTTTAGGTCAACAGGAGATATTGACATTGGCAAGATACAGAATTCTCAATACTTTCAAGCTCTTCTCAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTTGATCAACGGGGGAAGCAAAACAAGACAGACAGAGAAGCATCAAAGGAAGTGGTGCAAGCAAAGTTAACATCCATATATGGGAAAAGCAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTCAACTTGAAAAATAACAACTCTGAGGACTGCATAGTTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGGGTCCTGGTGTCTCTTCTGTTTTCGAAGTTGAAGGAGAAGGAAGAGCTTATGGAAACACTTTGCCGACAAAACGTGCACACGTGGAAATTACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCAATCAAGGAGGAAGTTAATCCCGATGTCACTGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGATGTAAAGAAAAAGCAGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAGTCCTACCAACAGGCTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCATCCGCAGTAATTTTGTCCCCCCTATTAAATCCAATGGTAGCAATACTGGAAATATAACTTCCCGAATTGCTGGCAACAAGTGTGGTGATTCTTTAGACGAGTCTACAAAGAAATGTTTAGAAATGCTGTATGGCCCTGATGGTGAACTTCCTGAGAAATTAAGGAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAAATCCCAATGTCCACTGGGATGACATAGCTGGATTGGCCCATGCCAAAGGTTGTGTCAATGAGATGGTCATATTACCTCTGCAACGCCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCTGGGGAGGCAAAAGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTTTTGTCTCAGCGTAAGTCAGATGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAATTTCTTATTGAAATGGAAGGTTTCGACGGTGGTACCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACTAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGATGGATTATTCAATCTATCAAACGAGGAAATGGATATTATATGCAACTTAACGGATGGTTATTCAGGATCAGACATGAAAAACTTGGTGAAGGATGCTTCTATGGGTCCCCTGAGAGAGAAAATAAGACAAGGTGTAAAAATTGCAGATTTGAAAAAGGAGGATATGAGGCTAGTAACTCTCCAGGACTTCAAAAATTCCCTGCATGAAGTGAGACCTTCTGTTTCACCTGATGAACTTGGAACTTATGAGCAATGGAACAAGAAATTTGGAAGCATGGCAGTTTAG 1992 0.4232 MEEESMKKCWRKEVAENLQRLHSLLFGVERALDQHNRDFSSAYILSLRLIGFIDSRSQSEIDQVFLQQTRRQALTYLHTAKQSLTPIIDRQAFEQVKRSPGPIFRSTGDIDIGKIQNSQYFQALLKPSKEKDCNQLVDQRGKQNKTDREASKEVVQAKLTSIYGKSSLRTSNGSKSFFNLKNNNSEDCIVIGRPQSHGIHTKGPGVSSVFEVEGEGRAYGNTLPTKRAHVEITSPRVGYVKSPSIKEEVNPDVTGNGFVTARAKLEMDVKKKQGAIGSPSAPVSPQCDNSPTNRLYGGRSYGVSRRGIRSNFVPPIKSNGSNTGNITSRIAGNKCGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMDKNPNVHWDDIAGLAHAKGCVNEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHEASRRLKTQFLIEMEGFDGGTEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIARSLLEKDGLFNLSNEEMDIICNLTDGYSGSDMKNLVKDASMGPLREKIRQGVKIADLKKEDMRLVTLQDFKNSLHEVRPSVSPDELGTYEQWNKKFGSMAV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03624 663 Gene3D - 553 639 - -
Trre4g03624 663 Pfam AAA+ lid domain 585 620 IPR041569 -
Trre4g03624 663 FunFam Fidgetin like 1 553 639 - -
Trre4g03624 663 FunFam Fidgetin-like 1 381 563 - -
Trre4g03624 663 Pfam ATPase family associated with various cellular activities (AAA) 422 552 IPR003959 GO:0005524|GO:0016887
Trre4g03624 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 658 IPR027417 -
Trre4g03624 663 ProSitePatterns AAA-protein family signature. 524 543 IPR003960 GO:0005524|GO:0016887
Trre4g03624 663 MobiDBLite consensus disorder prediction 273 295 - -
Trre4g03624 663 Pfam Vps4 C terminal oligomerisation domain 626 659 IPR015415 -
Trre4g03624 663 MobiDBLite consensus disorder prediction 279 295 - -
Trre4g03624 663 SMART AAA_5 418 554 IPR003593 GO:0016887
Trre4g03624 663 Gene3D - 381 655 IPR027417 -
Trre4g03624 663 PANTHER AAA DOMAIN-CONTAINING 300 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03624 Trre-Chr4 43617980 43625874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03624 336 658 Calmodulin-binding Proteins AT3G56690 30.330 4.88e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03624 K22766 - gmx:100789161 1013.06