Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03614 ATGCTGAGGGAAGCCGAGAGGAACAGGTTGAATATCAGTGTCAGTCCAAGTGGCGATGCTGATTTCAAAACGATCACTGAAGCGATCAACAGCATTCGCACACCGAATAGTAGAAGAGTGATCATTTCCATAGCTCCCGGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGGACACGATCAATAAACCAAAAATTACCGGAAATGCTAAAGCGTCTGACATCGGGAGTGATGGAAGACCACTTGGGACATACAATACTGCAACTGTTGGTGTGGATGCTGCCTACTTCATTGCAATGAACATAATATTTGAGAACACAGCAGAACCTCGTATAGGATCACATAACGATCAAGCAGTAGCCCTTCGTCTCTCGGGAACCAAATGCGCGGTTTACAATAGCGAAGTATATGGATTTCAAGACACTCTATATGATCACCAAGGCCTCCATTACTTCAAAAATTGCAAAATTCAAGGCACGGTTGATTTTATCTTTGGAAATGGAAAGTCCCTATACGAGGGCTGCACTCTAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCGAAGTTTTGAAAGGTGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGACAAGTTTATTTGGGAAGAGCATGGGGCAATTACTCGAGGGTAATTTTTTCTTATACCTACATGGATAGTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGGCAACGCACACCACTATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGTGGTCCGGGATCAAGCTTTGCTAGAAGACCTAGCTGGATACGGAGATTATCGGACAAAGATGCCCAAGAATTTATCAGAGTCCAATTCATTTATGGCGATACTTGGCTTAGCCCACCACTGTGA 939 0.4366 MLREAERNRLNISVSPSGDADFKTITEAINSIRTPNSRRVIISIAPGLYREKLLIPSTLPFITFLGDTINKPKITGNAKASDIGSDGRPLGTYNTATVGVDAAYFIAMNIIFENTAEPRIGSHNDQAVALRLSGTKCAVYNSEVYGFQDTLYDHQGLHYFKNCKIQGTVDFIFGNGKSLYEGCTLISIAQNSGFVTAQKREVLKGDTGFSILNSKVVGSGQVYLGRAWGNYSRVIFSYTYMDSLVLPEGWVDSMGNAHHYNLTVFYAEYKCSGPGSSFARRPSWIRRLSDKDAQEFIRVQFIYGDTWLSPPL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03614 312 SUPERFAMILY Pectin lyase-like 10 310 IPR011050 -
Trre4g03614 312 Gene3D - 7 310 IPR012334 -
Trre4g03614 312 ProSitePatterns Pectinesterase signature 2. 165 174 IPR033131 -
Trre4g03614 312 Pfam Pectinesterase 11 305 IPR000070 GO:0030599|GO:0042545
Trre4g03614 312 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 309 - -
Trre4g03614 312 FunFam Pectinesterase 6 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03614 Trre-Chr4 43528037 43531166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03614 12 310 Carbohydrate Esterase AT5G47500 44.333 4.25e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03614 K01051 - tpra:123885915 462.611