Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03604 ATGGAAAATCTTGATTTCATCTTGAGGGAAGCCGAGAGGAACAGGTTGAATATCAGTGTCAGTCCAAGTGGCGACGCTGATTTCAAGACAATCGCTGAGGCGATCAACAGCATTGCCACACCAAATAGTAGAAGAGTGGTCATTTCCATTGCTCCCTGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGGACACGGTCAATAAACCAAAAATTACCGGAAATGCTAAAGCGTCTGACATCGGGAGTGATGGAAGACCACTGAAGACATACAATACTGCAACTGTTGGTGTGGATGCTGCCTACTTCATTGCCATGAACATAATATTTGAGAATACAGCATCACCTCGTATAGGATCAAGTAACGATCAAGCAGTAGCTCTTCGTCTCTCGGGAGACAAATGCGCGGTTTACAATAGCGAAGTATATGGATTTCAAGACACTCTATATGATCACAAAGGCCTCTATTACTTCAAAGATTGCAAAATTCAAGGCACGGTTGATTTCATCTTCGGAAATGGAAAGTCACTATACGAGGGCTGCACTCTAATTTCCATAGCCCGAAATTCGGGCTTTGTCACAGCTCAAAAGCGTGAAGCTTTGAAATTTGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGACAAGTTTATTTGGGAAGAGCATGGGGCAATTACTCGAGGGTAATTTTTTCTTATACCTACATGGATAGTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGGCAACGCACACCACTATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGTGGTCCGGGATCAAGCTTTGCTAGAAGACCTAGCTGGATACGGAGATTGTCCGACAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTTACGGGGATACATGGCTTAGCCCACCATTGTGA 957 0.4347 MENLDFILREAERNRLNISVSPSGDADFKTIAEAINSIATPNSRRVVISIAPCLYREKLLIPSTLPFITFLGDTVNKPKITGNAKASDIGSDGRPLKTYNTATVGVDAAYFIAMNIIFENTASPRIGSSNDQAVALRLSGDKCAVYNSEVYGFQDTLYDHKGLYYFKDCKIQGTVDFIFGNGKSLYEGCTLISIARNSGFVTAQKREALKFDTGFSILNSKVVGSGQVYLGRAWGNYSRVIFSYTYMDSLVLPEGWVDSMGNAHHYNLTVFYAEYKCSGPGSSFARRPSWIRRLSDKDAQEFIGVQFIYGDTWLSPPL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03604 318 SUPERFAMILY Pectin lyase-like 16 316 IPR011050 -
Trre4g03604 318 Gene3D - 13 316 IPR012334 -
Trre4g03604 318 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 315 - -
Trre4g03604 318 FunFam Pectinesterase 12 318 - -
Trre4g03604 318 ProSitePatterns Pectinesterase signature 2. 171 180 IPR033131 -
Trre4g03604 318 Pfam Pectinesterase 17 311 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03604 Trre-Chr4 43463009 43474979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03604 18 316 Carbohydrate Esterase AT5G47500 44.000 2.37e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03604 K01051 - tpra:123885915 464.536