Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03601 ATGGCTAGAACAAATTCTACCAACCTCCCCATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAACACTTAAATTACCAAATAAGTTTACAAAAAGTCATGAAGTTGGTCTATCAAATCCAGTGTTGATCAATCCTCCTGATGGCACAAAATGGAAAGTTTATTGGAAAAAAGTCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAAAAATTTTACTCAAAATTACTCTCTAGGACATGGCTCTTTGGTGTTGTTTAAATATAAAAAAGAAGGAACTTCCAACTTCAATGTACTCATACTTGGCCAGAATGCAGTGGAAATAGACTATAGCCCTTCATGTCACACTTATGATGATGAATCTATTGAGATTTTGGATGAGAAGGACAATGTTGATCATAGTGATGATGAATCACTTATGATTTTGGATGAATTAAGTTCTCCTCGACCACATAAAAAAGTTAGAGGTGAGACTAAGAACATTACTAAAAGAACTTCATCACTGAATATGCCAAAGGAAGCTAGAGCTCAGAAAATTGCTGAAAACTTCATCTCAAGCAATCCCTTTTTCACAATTTTTATAAAGCCTCACATGGTCGAAAATCATCAATTGTGTGTACCAAGTTTAAAAGGGGTTATTGCGAACAAAGCGAAGGATGTGATGCTGCAGATTGGAAAAAGATCATGGAATGTGAAACTGCTCCGTTGTTGTGACGATAAAAATGGCCGTCGCCTTTCAGCCGGTTGGTCATTGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATGTTTGTGTATTTGAACTGATAAACAAAAAAGATTTAGTTTTTAAAGTTCATGTTAAGGGATAG 852 0.3615 MARTNSTNLPIRFFKIILQTNLQTLKLPNKFTKSHEVGLSNPVLINPPDGTKWKVYWKKVNGEIWFQKGWKNFTQNYSLGHGSLVLFKYKKEGTSNFNVLILGQNAVEIDYSPSCHTYDDESIEILDEKDNVDHSDDESLMILDELSSPRPHKKVRGETKNITKRTSSLNMPKEARAQKIAENFISSNPFFTIFIKPHMVENHQLCVPSLKGVIANKAKDVMLQIGKRSWNVKLLRCCDDKNGRRLSAGWSLFASESGLQPGDVCVFELINKKDLVFKVHVKG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03601 283 SUPERFAMILY DNA-binding pseudobarrel domain 186 281 IPR015300 -
Trre4g03601 283 Gene3D - 7 106 IPR015300 -
Trre4g03601 283 CDD B3_DNA 12 102 IPR003340 GO:0003677
Trre4g03601 283 ProSiteProfiles B3 DNA-binding domain profile. 10 105 IPR003340 GO:0003677
Trre4g03601 283 PANTHER B3 DOMAIN-CONTAINING 10 277 - -
Trre4g03601 283 Gene3D - 170 283 IPR015300 -
Trre4g03601 283 ProSiteProfiles B3 DNA-binding domain profile. 190 283 IPR003340 GO:0003677
Trre4g03601 283 MobiDBLite consensus disorder prediction 151 171 - -
Trre4g03601 283 Pfam B3 DNA binding domain 190 280 IPR003340 GO:0003677
Trre4g03601 283 Pfam B3 DNA binding domain 21 102 IPR003340 GO:0003677
Trre4g03601 283 SUPERFAMILY DNA-binding pseudobarrel domain 12 112 IPR015300 -
Trre4g03601 283 CDD B3_DNA 190 281 IPR003340 GO:0003677
Trre4g03601 283 SMART B3_2 190 283 IPR003340 GO:0003677
Trre4g03601 283 SMART B3_2 13 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03601 Trre-Chr4 43398360 43401710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03601 9 279 B3 DNA Binding Superfamily AT3G18990 27.647 1.71e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre4g03601 B3 2.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03601 - - tpra:123887513 450.669