Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03583 ATGTCTCGCAACTCTCAAACATGCAACCACGGAAGAGAGCACAGCATTATGATTTTCGGTGTTCGCCTCACCGGAAGAACTAACAACGACAATCAACTCTCTGAATACCAACAACCTCTTCCTCAAGTTTCCAACTCCACCAGTGCCAGTTATGTCTCCGACAATGTCGTTCATGCTCCGGACCGATCCCGCAAATGCAAACGAGGTGTTCCCTGGACGGAAGAAGAACAAAGGTTGTTCTTGTTAGGGTTGAAAGAGATTGGTAAGGGTGACTGGAAAAGAATTTCTAGCAACTTTGTTAAAACTCGCACAGCAACTCAGGTTGCAAGTCATGCTCAAAAGCATTTTCTCCACCGTCCTAATCAGAATCGCCGCCGCAGGAAACCTAGTGTCTTCGATCTTACCATTGATAAGGTGATAGAATCTTCAACTATTATGGAAGATGAGCAGATTCAGCAAGAAACTGTGGTGCCCCTACCTCCACCAACCCCCACCGCATATCCATCGACACACAATGGTGGCATCCCCGACAGCCCTTTACCGATCAGTCATGGTCCAGTAGCATTGCCGGTGTTGCCTCTTTCTAGGTTCAACTTGAATAACAATGGATCTTCTTCTTCCACCGAGACTTTTCCATTGTCATTGAAGCTATAA 654 0.4633 MSRNSQTCNHGREHSIMIFGVRLTGRTNNDNQLSEYQQPLPQVSNSTSASYVSDNVVHAPDRSRKCKRGVPWTEEEQRLFLLGLKEIGKGDWKRISSNFVKTRTATQVASHAQKHFLHRPNQNRRRRKPSVFDLTIDKVIESSTIMEDEQIQQETVVPLPPPTPTAYPSTHNGGIPDSPLPISHGPVALPVLPLSRFNLNNNGSSSSTETFPLSLKL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03583 217 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 118 IPR006447 GO:0003677
Trre4g03583 217 SMART sant 68 118 IPR001005 -
Trre4g03583 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 120 IPR017930 -
Trre4g03583 217 ProSiteProfiles Myb-like domain profile. 71 116 IPR001005 -
Trre4g03583 217 MobiDBLite consensus disorder prediction 156 178 - -
Trre4g03583 217 SUPERFAMILY Homeodomain-like 66 119 IPR009057 -
Trre4g03583 217 FunFam transcription factor MYB1R1 70 121 - -
Trre4g03583 217 ProSiteProfiles SANT domain profile. 67 120 IPR017884 -
Trre4g03583 217 CDD SANT 71 116 IPR001005 -
Trre4g03583 217 PANTHER TRANSCRIPTION FACTOR KUA1 3 165 - -
Trre4g03583 217 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Trre4g03583 217 Gene3D - 72 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03583 Trre-Chr4 43100133 43101461 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g03583 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03583 - - tpra:123909419 251.521