Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03566 ATGGGAAGCAGAAAGGAAGAAGAGAAGATTGAGAAAATTATTAGGGGTCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGTATGTACAACATTTTGGACCTTCGTTTGCATTACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTTCCAAGAAGTTGATGCTCTTCAAAATGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAATACAGCGGTTGCCAGATAGCAGCAATGTTCATAAAGTGAGGGAGTTCATGAAGAATGTATATGTGGATAAAAGATATGCTGGAACAACGTCGTCTGAAAGACCTCCAAGAGATGCACAGAACCCTGCAATTCATGAAGACGAGATTAGGCGTGCCAGTTCTTACCATTCATATTCACAAAGCCCTCCATATGATAATCAATATGAGGATCGTCGCTATGGAAAGCAAGCAGGGGCTCTGACGAGGAAGCCTGGGTCAGATAAAGTCCGTTATGAAGGGAAGATATCTAGTATTATCTATAGTCCTGGTCGTTTCAGTGATCACACATATGATGATAGATTTGCAAATGAGGGATCTGGTCCAAGAAATTCTGACTTTTCCGTGTCGAGTGGTCATGAGCAATTCAAACCCAATGTTCAGTCTCCTAAGTTTCAGAAGGACATTGAGTTTAACAGTGCAGCTTATAAGCGTCCTGGTTCTAGTTCAAGCGAAGATGTGTGGACTCAAGCAAAAAATGCAGCTCTTGAATCTAATGCTGCTGCTAAGAGAGATGCAGATGGAATTCATCGTCCTCAGAGAACTACATCATTGCAACCAACAGACAGCAACCTTTCGACCTTAAGATCTTACAATTCTGTTGGTTCAGTTGATTTTTTCTCCGAAGCTGTCCAATCTTCAGGGTCCCTTCAAGATAAAGCATTAGGAGTTTCACCGCCATCTGGTCCTGCAAGATCTGTTAGCTTTGATTTTTCCAAGGCACAAGTGGCATCACCTTCATCTGTTGATCTTTTTCAAAGAGCTGCCCCATCTCAATCTGCATTGGGAGATCTGTTTCAACTATCTGATATGGAAGCAGCTCCATCTTTCAACGGAAATATACCTCTGCAAACATCCCAAGTTGCATCTGTTGACTTCTTTGTAGATCTTCCTCAGCAGCCTTCTGCTGCAACCTCAGATGCAAAATCTGTGGAGTTATCTATCCCTAAAAATGAAGGGTGGGCAACATTTGATACACCTCAGTTCACATCAACTACTGCACAAGTGGAAGTTCCAACGGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCAGCAGCAGCATTTGATACACCTCAGTTTGCATCATCTACTGCACAAGTGGAAATTTCTGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCAGCAGCAGCAGCACCTTCAAGTGCTGAATCTTTGCAGGGTAGATTTGATCCATTTTCAAATTCAAATATGCAATGGCCATCTTTTGAAATTTCTAGTGCGGATGTACATTCTTCTGTTACATCTAATATATGGCATGACAGTGTATGGAATGGAGAAAAACAAGTTCCCGTTATGGCAACAGACACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCATCTTCCCGTGGATGGCAATAGTCAAGGTTTACAATTGCATAATTTCCCATCAGAAAGTTTTGGTTTAAACGCTTCTGAGAGACCCAATAAAGATGGAATCCAAGGTGTTGCTCCTATCAGAGGATTTGATAATCATGAATTCCCATCAAATGGTGATATTCAACATAATGGAATCAATCATAAATCGACAAATCCATTTGATTTTCCCTTTGATTCTGATGTAGATCAGAGCGATATGTTCCTTGATATGAGTTCTTTGCAAGCTGCTCTGCCAGATGCCCTCTTGCCTGCTGCATTTGGTGGTATCGCTGAACCCTGGCTCCCTCAAAATACCGTGACTCCATATATTTCCTCTGCAGGAGAAGGTGGTTTGTCATTCATGGCAGTGCAAACGCCAAGCTCTCAATTACAGAACATCCAAGCACAGGAACCAGTTGCTTCGGTTGGGGGAAATCCTTTTGCATAG 2196 0.4203 MGSRKEEEKIEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCITCSGIHREFTHRVKSVSMAKFTFQEVDALQNGGNQRAREIYLKNWDFQIQRLPDSSNVHKVREFMKNVYVDKRYAGTTSSERPPRDAQNPAIHEDEIRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKVRYEGKISSIIYSPGRFSDHTYDDRFANEGSGPRNSDFSVSSGHEQFKPNVQSPKFQKDIEFNSAAYKRPGSSSSEDVWTQAKNAALESNAAAKRDADGIHRPQRTTSLQPTDSNLSTLRSYNSVGSVDFFSEAVQSSGSLQDKALGVSPPSGPARSVSFDFSKAQVASPSSVDLFQRAAPSQSALGDLFQLSDMEAAPSFNGNIPLQTSQVASVDFFVDLPQQPSAATSDAKSVELSIPKNEGWATFDTPQFTSTTAQVEVPTAAFDTPQFTSSTAQVEIPAAAFDTPQFASSTAQVEISAAAFDTPQFTSSTAQVEIPAAAAPSSAESLQGRFDPFSNSNMQWPSFEISSADVHSSVTSNIWHDSVWNGEKQVPVMATDTQPWNAFEDSGTHLPVDGNSQGLQLHNFPSESFGLNASERPNKDGIQGVAPIRGFDNHEFPSNGDIQHNGINHKSTNPFDFPFDSDVDQSDMFLDMSSLQAALPDALLPAAFGGIAEPWLPQNTVTPYISSAGEGGLSFMAVQTPSSQLQNIQAQEPVASVGGNPFA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03566 731 PANTHER ARFGAP/RECO-RELATED 1 731 IPR044820 GO:0005096
Trre4g03566 731 MobiDBLite consensus disorder prediction 144 164 - -
Trre4g03566 731 MobiDBLite consensus disorder prediction 270 301 - -
Trre4g03566 731 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre4g03566 731 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Trre4g03566 731 CDD ArfGap_AGFG 15 121 - -
Trre4g03566 731 MobiDBLite consensus disorder prediction 215 233 - -
Trre4g03566 731 MobiDBLite consensus disorder prediction 286 301 - -
Trre4g03566 731 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Trre4g03566 731 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Trre4g03566 731 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Trre4g03566 731 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Trre4g03566 731 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Trre4g03566 731 MobiDBLite consensus disorder prediction 210 233 - -
Trre4g03566 731 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Trre4g03566 731 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03566 Trre-Chr4 42812103 42818643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03566 14 88 C2H2 Transcription Factor Family AT4G05330 36.709 1.43e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03566 K15044 - gmx:100788316 965.296