Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03561 ATGAGTTCACTAAATTTTAACAATAACGGTTGTGGTTTCTCTTTGGACTTGAATGTTGCTTTGGAAACAGAGAAATTTGAGAAAGCTAATAATTGTATTAGAGGTCGTTGGACACTAACCGAAGATGATAAGCTCAGAAAGCTTGTTAAATACTTTGGTCCTCACAATTGGAATCACATTGCGGAGCATTTTCATAGAAGACCAGGGAAAAGTTGCAGATTAAGGTGGATTAATCATCTAGAACCTAAAATTAACAAATCAACATTTAGTGAAGAAGAGGAGGTGAAGATTTTAGCTGCTCAAAAAATATATGGTAACAAATGGGCAATCATTTGCAAACTATTTCCTGGTAGATCTGATAATCAAGTTAAGAATCATTTTCATGTGATGAGGGCTAGGATGCAAAGGCAACAATCATCATTTTTCTTTCAAAAGAGAAATCCAATATTTCAAACCCCTCCAATGAATAATGTAGCTATTGGATCAATTACAAGTACAAATGATATATCCAATTCAGCTTGCACACTTGCCAGCCGCTGCTTTACTAGGCCCTTACTTAATTGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAAAAGAAGGTGAAAGCGGGAAATTTTGGTTATGAAACCAATTTCAGTGCAATTAAAGGTTCATATGTAGGTCACATGGGAAAGCTTAATAGTGTGGACAAATCTAATTGTTCATATTCAAACTCGGAAGCTTCAGTATCAGACTCGGTTGCAACAATAAGGACCAATGTATCAATTTTTGGGGAATTTGAAAATGCGAGGGGTAAGACTAAGGTGCAATTTATCGACTTCCTTGGAATAGGTGATAAATAG 849 0.3592 MSSLNFNNNGCGFSLDLNVALETEKFEKANNCIRGRWTLTEDDKLRKLVKYFGPHNWNHIAEHFHRRPGKSCRLRWINHLEPKINKSTFSEEEEVKILAAQKIYGNKWAIICKLFPGRSDNQVKNHFHVMRARMQRQQSSFFFQKRNPIFQTPPMNNVAIGSITSTNDISNSACTLASRCFTRPLLNCQAYGSQMGLHGEKKVKAGNFGYETNFSAIKGSYVGHMGKLNSVDKSNCSYSNSEASVSDSVATIRTNVSIFGEFENARGKTKVQFIDFLGIGDK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03561 282 CDD SANT 88 130 IPR001005 -
Trre4g03561 282 ProSiteProfiles Myb-like domain profile. 34 80 IPR001005 -
Trre4g03561 282 Gene3D - 33 85 - -
Trre4g03561 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Trre4g03561 282 FunFam MYB transcription factor 34 85 - -
Trre4g03561 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Trre4g03561 282 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Trre4g03561 282 CDD SANT 36 80 IPR001005 -
Trre4g03561 282 SUPERFAMILY Homeodomain-like 32 127 IPR009057 -
Trre4g03561 282 Gene3D - 87 147 - -
Trre4g03561 282 SMART sant 33 82 IPR001005 -
Trre4g03561 282 SMART sant 85 133 IPR001005 -
Trre4g03561 282 Pfam Myb-like DNA-binding domain 37 94 - -
Trre4g03561 282 PANTHER MYB PROTEIN-RELATED 34 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03561 Trre-Chr4 42726279 42727704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03561 32 175 MYB Transcription Factor Family AT3G29020 48.649 3.23e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g03561 Myb_DNA-bind_6 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03561 K09422 - jre:109000849 205.682