Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03553 ATGAGTTCACTAAATTTTAACAATAACGGTTGTGGTTTCTCTTTGGACTTGAATGTTGCTTTGGAAACAGAGAAATTCGAGAAATCTAATAATTGTATTAGAGGTCGTTGGACACTAACCGAAGATGATAAGCTCAGAAAGCTTGTTAAATACTTTGGTCCTCACAATTGGAATCACATTGCGGAGCATTTTCATAGAAGACTAGGGAAAAGTTGCAGATTAAGGTGGATTAATCATCTAGACCCTAAAATTAACAAATCAACATTTAGTGAAGAAGAGGAGGTGAAGATTTTAGCTGCTCAAAAAATATATGGTAACAAATGGGCAATCATTTGCAAACTATTTCCTGGTAGATCTGATAATCAAGTTAAGAATCATTTTCATGTGATGAGGGCTAGGATGCAAAGGCAACAATCATCATTTTTCGTTCAAAAGAGAAATCCAATATTTCAAACCCCTCCAATGAATAATGTAGCTATTGGATCAATTACAAGTACAAATGATATATCCAATTCAGCTTGCACACTTGCCAGCCGCTGCTTTACTAGGCCTTTACTTAATTGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAAAAGAAGGTGAAAGCGGGAAATTTTGGTTATGAAACCAATTTCAGTGCAATTAAAGGTTCATATGTAGGTCACATGGGAAAGCTTAATAGTGTGGACAAATCTAATTGTTCATATTCAAACTCGGAAGCTTCAGTATCAGACTCAGTTGCAACAATAAGGACCAATGTATCAAATTTTGGGGAATTTGAAAATGCGAGGGGTAAGACTAAGGTGCAATTTATCGACTTCCTTGGAATAGGTGATAAATAG 849 0.3581 MSSLNFNNNGCGFSLDLNVALETEKFEKSNNCIRGRWTLTEDDKLRKLVKYFGPHNWNHIAEHFHRRLGKSCRLRWINHLDPKINKSTFSEEEEVKILAAQKIYGNKWAIICKLFPGRSDNQVKNHFHVMRARMQRQQSSFFVQKRNPIFQTPPMNNVAIGSITSTNDISNSACTLASRCFTRPLLNCQAYGSQMGLHGEKKVKAGNFGYETNFSAIKGSYVGHMGKLNSVDKSNCSYSNSEASVSDSVATIRTNVSNFGEFENARGKTKVQFIDFLGIGDK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03553 282 CDD SANT 88 130 IPR001005 -
Trre4g03553 282 Gene3D - 87 147 - -
Trre4g03553 282 PANTHER MYB PROTEIN-RELATED 34 188 - -
Trre4g03553 282 SMART sant 85 133 IPR001005 -
Trre4g03553 282 SMART sant 33 82 IPR001005 -
Trre4g03553 282 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Trre4g03553 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Trre4g03553 282 Gene3D - 33 85 - -
Trre4g03553 282 SUPERFAMILY Homeodomain-like 32 127 IPR009057 -
Trre4g03553 282 CDD SANT 36 80 IPR001005 -
Trre4g03553 282 ProSiteProfiles Myb-like domain profile. 34 80 IPR001005 -
Trre4g03553 282 Pfam Myb-like DNA-binding domain 37 94 - -
Trre4g03553 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Trre4g03553 282 FunFam MYB transcription factor 34 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03553 Trre-Chr4 42566315 42567739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03553 32 175 MYB Transcription Factor Family AT3G29020 50.000 1.24e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g03553 Myb_DNA-bind_6 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03553 K09422 - jre:109000849 213.386