Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03552 ATGAGTTCACTTAACTTTAATAATGATAGTTTCTCTTTCGACTTGAATGTTTTCCCTTTATCTGAAGTTCCAACTTCATCCTCTACTCCTCTTTTAGGTCATGTTGATGACAATAAGTCTGAAAAGTCTGAAATACCCTTTGATATTTTGAAACCTTTAGTGATCCATCCTCATGAGAAACCAGTTACAAACACAGAAGGGAATGAAGGGTATTTTGATGTGCAAAAAAACATGTCTTTGAAAGTTGATGAGGTGGAAAATGAAATTGAAAATGTTTCTTCGGAAACAAAAAAATCTGGGAACAATAATTTTTTTATTAGAGGTAATTGGACACCAACGGAAGATGATAAGCTTAAAAAACTTGTTGAAGAGTTTGGTCCTTACAATTGGAACAACATTGCTAAATATTTTAATGAAAGATCAGGGAAAAGTTGCAGATTAAGGTGGCGTAATCAACTACATCCCAAGCTTAATAGATCATCATTCAGTGAAGAGGAAGAGGCCAAGCTTTTGGTTGCTCAAAAATTTTATGGCAACAAATGGACAACCATTTGCAAACTATTTCGTGGAAGGACAGACAATGCAGTTAAGAATCATTTTCATATTATGATGGCTAGGAAGCAAAAGGAGGCAAAAAAGAGAAACCCAACATTTGTAGCTAATTCAGCTTGCACTAATATCAGCCAATTTGCTAAGCCTTTATTTAACTATCAAGCCTATGCTTCACAAATGGAAATGAGTTTACTTGGAGAAAGGAAGGTGGAAGGTGAGGATTTTAGCTATGATAACAATTTCAGTGCAATGAAAGGTTCATATGTACGTCAAATGGGAATGCTTAAGAGTTTCGACCAATTCAATTATTCAAATTTAAATTTAAAAGCTTCAGTATCAGAGTCAGTTCCAACAATTAGGCACAATGTATCAATTTTGGGACAAAGTGAAAATGTGAGAGATATGATTAAGGTGCCATTTATTGATTTCCTTGGAGTGGGTGATACATAG 1002 0.3443 MSSLNFNNDSFSFDLNVFPLSEVPTSSSTPLLGHVDDNKSEKSEIPFDILKPLVIHPHEKPVTNTEGNEGYFDVQKNMSLKVDEVENEIENVSSETKKSGNNNFFIRGNWTPTEDDKLKKLVEEFGPYNWNNIAKYFNERSGKSCRLRWRNQLHPKLNRSSFSEEEEAKLLVAQKFYGNKWTTICKLFRGRTDNAVKNHFHIMMARKQKEAKKRNPTFVANSACTNISQFAKPLFNYQAYASQMEMSLLGERKVEGEDFSYDNNFSAMKGSYVRQMGMLKSFDQFNYSNLNLKASVSESVPTIRHNVSILGQSENVRDMIKVPFIDFLGVGDT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03552 333 SUPERFAMILY Homeodomain-like 106 200 IPR009057 -
Trre4g03552 333 CDD SANT 161 201 IPR001005 -
Trre4g03552 333 PANTHER MYB PROTEIN-RELATED 107 219 - -
Trre4g03552 333 CDD SANT 109 151 IPR001005 -
Trre4g03552 333 Coils Coil 75 102 - -
Trre4g03552 333 Gene3D - 106 158 - -
Trre4g03552 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 157 IPR017930 -
Trre4g03552 333 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Trre4g03552 333 Gene3D - 161 224 - -
Trre4g03552 333 Pfam Myb-like DNA-binding domain 110 170 - -
Trre4g03552 333 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Trre4g03552 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 208 IPR017930 -
Trre4g03552 333 SMART sant 158 206 IPR001005 -
Trre4g03552 333 SMART sant 106 155 IPR001005 -
Trre4g03552 333 FunFam MYB transcription factor 107 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03552 Trre-Chr4 42561400 42563427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03552 107 333 MYB Transcription Factor Family AT1G17950 36.214 6.34e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g03552 Myb_DNA-bind_6 7.8e-19 CL0123