Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03546 ATGATGTGTAGTTTCTTGGGCTCCTATTTTGGTCTATCAGTTTTAGGTTTCCTTTTTATAAATGGGATGCAGCAATCTTCAGCCCTTTTGCCCACCAAAGCCCGAGGATGTTGCAACCATTTGCTATACAAGTGGCACAACCAGAACCCCAAAGGTGTGGAGGTTCATATAAAATTATGGTTTACTTTTCTTGGAGCTCACGACAACAATATGGATCCAAATCAAAAGAAAAATAAAGAGCTGGTCGACAAATTTTGGGAAGAACAATTCAAGGAACTTCGCGAGACCGATGATTTTAAGCCTCTTATTCCTATCTCCGAAGTTAAGGAGATCATGGAAGAGGAAGCAGATGTGAAGATTGCAAATGAGACTTGTGTTTTCATGGCAAAAGCTTGTGAATTGTTCATTAAGGAAATGATAATGAGATCTATGCTCAAAATGAAAGAAGCTGGAAGGACAACAATTGAAATCAATGACGTGGTTGATTCTTTTGGTGATTTTGAATCGGAGACTAAAATGCAGGATGACAAAACTCAAGTTTCTCCAAATGAAGATGATTAA 561 0.3815 MMCSFLGSYFGLSVLGFLFINGMQQSSALLPTKARGCCNHLLYKWHNQNPKGVEVHIKLWFTFLGAHDNNMDPNQKKNKELVDKFWEEQFKELRETDDFKPLIPISEVKEIMEEEADVKIANETCVFMAKACELFIKEMIMRSMLKMKEAGRTTIEINDVVDSFGDFESETKMQDDKTQVSPNEDD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03546 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 75 160 - -
Trre4g03546 186 Pfam Core histone H2A/H2B/H3/H4 87 160 IPR007125 GO:0003677
Trre4g03546 186 SUPERFAMILY Histone-fold 70 161 IPR009072 GO:0046982
Trre4g03546 186 Gene3D Histone, subunit A 65 169 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03546 Trre-Chr4 42460473 42462523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03546 85 185 CCAAT-HAP5 Transcription Factor Family AT1G08970 37.864 4.71e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03546 K08066 - tpra:123885942 174.481