Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g03546 | ATGATGTGTAGTTTCTTGGGCTCCTATTTTGGTCTATCAGTTTTAGGTTTCCTTTTTATAAATGGGATGCAGCAATCTTCAGCCCTTTTGCCCACCAAAGCCCGAGGATGTTGCAACCATTTGCTATACAAGTGGCACAACCAGAACCCCAAAGGTGTGGAGGTTCATATAAAATTATGGTTTACTTTTCTTGGAGCTCACGACAACAATATGGATCCAAATCAAAAGAAAAATAAAGAGCTGGTCGACAAATTTTGGGAAGAACAATTCAAGGAACTTCGCGAGACCGATGATTTTAAGCCTCTTATTCCTATCTCCGAAGTTAAGGAGATCATGGAAGAGGAAGCAGATGTGAAGATTGCAAATGAGACTTGTGTTTTCATGGCAAAAGCTTGTGAATTGTTCATTAAGGAAATGATAATGAGATCTATGCTCAAAATGAAAGAAGCTGGAAGGACAACAATTGAAATCAATGACGTGGTTGATTCTTTTGGTGATTTTGAATCGGAGACTAAAATGCAGGATGACAAAACTCAAGTTTCTCCAAATGAAGATGATTAA | 561 | 0.3815 | MMCSFLGSYFGLSVLGFLFINGMQQSSALLPTKARGCCNHLLYKWHNQNPKGVEVHIKLWFTFLGAHDNNMDPNQKKNKELVDKFWEEQFKELRETDDFKPLIPISEVKEIMEEEADVKIANETCVFMAKACELFIKEMIMRSMLKMKEAGRTTIEINDVVDSFGDFESETKMQDDKTQVSPNEDD | 186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g03546 | 186 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 75 | 160 | - | - | |
| Trre4g03546 | 186 | Pfam | Core histone H2A/H2B/H3/H4 | 87 | 160 | IPR007125 | GO:0003677 | |
| Trre4g03546 | 186 | SUPERFAMILY | Histone-fold | 70 | 161 | IPR009072 | GO:0046982 | |
| Trre4g03546 | 186 | Gene3D | Histone, subunit A | 65 | 169 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g03546 | Trre-Chr4 | 42460473 | 42462523 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g03546 | 85 | 185 | CCAAT-HAP5 Transcription Factor Family | AT1G08970 | 37.864 | 4.71e-15 | 68.9 |