Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03543 ATGAAGTTCATTACCATCTTAATGATATTCTTCTTTGTTCTTCCTTTCTCATTGGCTCAACTAAGGTTTGGCTATTATAGCTTTACATGTCCATTAGCAAATGAAATTGTAAGTGAGGCTGTGCAAAACTATTACCAAAGTGATATAACCATTGTTGGTGCCTTGATTCGTTTGCACTTTCATGATTGTATTTCCAATGGTTGTGACGCTTCAATACTAATAGATTCAACAGAAAATAGAAAATCAGAGAAAGATGCAAGACCAAACCAAACGCTACGAGGATTTGACCTAATTGACGACATCAAGAGTACCTTAGAACAAGAATGCCCCGAAACCGTTTCGTGTGCAGATATCATAACAATGGCCACAAGGGAAGCAATTGCATTAGCAAATGGACCAAGATACCATGTCTTAACCGGAAGAAGAGATGGATTAGTATCAAATGCCTTAAATGTGACAATTCCTGGAACATCACTTAATGTGTCACAAGCTCTAAAAAAATTTACCTCAAAAGGGTTAACATTAGAAGACATGGTAACCCTTATTGGAGCACACACTATTGGTTTTTCTAAATGCAAATTTTTTCAAAATAGGCTATCAAGTTTTAGATCAGGAAGAATTGACCCTACAATGGATCCTAATTTAAATGCTTATTTGGTTGAAAAATGTGGTTCAATATTTAACCCTGCAGAGAATCATACTTCAGTGTTTTTGGATGAAGAAACACCTTTTGATTTTGACAATCAATTCTACAAACAAATTATTAATAGGAGAGGGATACTTCATATTGATCAACAACTTGCTTTGGATCCTATTTCTAGAGATTTGGTTTGGAATTTTGCAAGAGGTAATTTTAACTTTTGGGATAGATTTGGAGTTGCTTGGAGTAAGCTTGGAAGAATTGAAGTTTTAGTTGGCAATGAGGGTGAAATTAGAAGAAATTGCAGGGCTTTCAATCATGATATTTGA 969 0.3488 MKFITILMIFFFVLPFSLAQLRFGYYSFTCPLANEIVSEAVQNYYQSDITIVGALIRLHFHDCISNGCDASILIDSTENRKSEKDARPNQTLRGFDLIDDIKSTLEQECPETVSCADIITMATREAIALANGPRYHVLTGRRDGLVSNALNVTIPGTSLNVSQALKKFTSKGLTLEDMVTLIGAHTIGFSKCKFFQNRLSSFRSGRIDPTMDPNLNAYLVEKCGSIFNPAENHTSVFLDEETPFDFDNQFYKQIINRRGILHIDQQLALDPISRDLVWNFARGNFNFWDRFGVAWSKLGRIEVLVGNEGEIRRNCRAFNHDI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03543 322 FunFam Peroxidase 155 298 - -
Trre4g03543 322 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601
Trre4g03543 322 Gene3D - 24 319 - -
Trre4g03543 322 Gene3D Peroxidase, domain 2 155 298 - -
Trre4g03543 322 SUPERFAMILY Heme-dependent peroxidases 20 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PANTHER - 5 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Trre4g03543 322 CDD secretory_peroxidase 20 318 IPR033905 GO:0004601|GO:0042744
Trre4g03543 322 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 ProSiteProfiles Plant heme peroxidase family profile. 20 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 Pfam Peroxidase 38 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g03543 322 FunFam Peroxidase 24 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03543 Trre-Chr4 42449102 42450534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03543 7 319 Peroxidase AT5G17820 50.637 3.73e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03543 K00430 - gmx:100816459 366.311