Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03538 ATGGAGCCTATTGAGAGTACAACTTTGCTTAAGTTGAAAGACTTTATGGGTGATGTTAGGGTAAAAAAAATAGAAGATTTGTTTAGTTCTCCTGAATGTGGAGTTTTTGTTGTTGTTGGTTGGTTTGTTTCGGTTGTCGAGGGCGTTGATATGTGGTTTCCAACTCTATCTATGAACTCTAGGCCAAGGTTTAGAATGAAAGTTGAAGTTAAGGATGGTGAGGAAGCAGCTGTGTTTTCATTGTTTGATTCAGATGTCGAGAGTTTGGCAGTGGAAACATGTCCATTGTTAAGGTCAATGGGAGAATCATGCTCAACCTTCCCAGATGAGATAGAATGTTATTATGGAGATGCAATTTTATATAAGGTTGAAAAAGATCATATAGAGGAAGATGGAAAAAATGCTAATTTTAAAGTTATTTCAATTTGTAATGATGTAGATGTTGTCAATAAGTTCATTGATGAATATCTTCCTCATATATCAAACATCTCTCCTATGGAGTTTTTACCCCAAGGCTATCCAGCGGACGCATGCATTTCTGGAACTGTTTTGGAGGCAAAGAGTGCAATTGCTGCAAGTGATGCAGTGAAAAATGGGGAAATCGTTTCTGTGGAGATGATTCTGGCTGATCAGACTGGTCACAAAATACAGGCTTCCATTCCAAAAATTCTATGTCCTATGTTTGACAACAAAATCATTGAGGGTAAAATATATATAATGTCGAATTTCACCGTTAAATCCAACGTTGGTGACTTATTAGGCAGTTTTCATAGGATTTTGTTGGTGTTCAACGCCAAAACTGAGGTTAAGAGAACTTGGGGTTATGGCTTTCCATCACATGGAGTCACTTTGATAGGCTCTACTGATGTTTTGTCCCTGAAAGAAAAGTTTAAATATTTGATTGATGTCATTGGTGTTGTTACTTATGTTAGGCATGACAAAAATATATTCTCTGACGGTACTACCACCAACACAATCACTTTGAAGCTTACTGATAATCGGGACTCATATGAGTGTGAGTTATCTGGAAACTATGTCAACCTTTTTCGTGAGATGATGAAGGATATTAGATTGGGACGGCCCGTTGTTGTTCTGCAGTGGGCGAAAGTAACTAATATCCAAGGACGAAATGTTGTTCAGAGTGTTGATGGGAGTACAAAGTTGTATGTCAATCCGACTTTCTACAAGGCAGCGCAGTTTAGGAAAGGTTTGGTTCCTAAGCTTAACTCAAAGCGAAAAACCCTTGGTCTACCTCGAACTGACAAACCGATCGGCTTCAATTTCACAACACATTATCATTGCAAGAGCATTTCACAACTCAAGGAGGATCCCACACTTGGAATATATTTGGTTAATGCTCGATTAATGGATGTTGATGCGCTTGACACTTGGTGGTTTAGAGTTAAAATAGTTATCGATGATGAGAGCGGTACAACATTTGTCGAGTTGTTTGATCATGTCATGCTTCCCATTGCTACCGTCGACCCAAGAAAGCCGCAGATTGCGGCGAATTATTTCCCTCGTGCATTTGAGTCAGTAGTTGGAAAAAGCATTATGTTTATAATTGAGAAAAAGAGGCATGATGCTCAGTATTGCGATGGAATGTTTGAGGTATTATGTGTATCCGATGATCCAGCGATTATGAAATATTATGTTGACAGAGGGGTTTGTTCTACTTCATCTAAGGAGGTTGATAAAATTATCGATAAGGAAGGAAATCTGATGAGGCCCATTGTTTATGAATCTCCCGTAACCACTACTAAGGAACTTTTTGCTGAATATTTGCATCCAAACTCAGCAACTTCGCAAGTGTTGGAAGCTGGGGAAAGCTCTACTGCTGCTGCAACCAACACAGATGAAGAAAATCCAGACCCAAGATCCGTTCGTCCTCGCATTACTTAA 1902 0.3906 MEPIESTTLLKLKDFMGDVRVKKIEDLFSSPECGVFVVVGWFVSVVEGVDMWFPTLSMNSRPRFRMKVEVKDGEEAAVFSLFDSDVESLAVETCPLLRSMGESCSTFPDEIECYYGDAILYKVEKDHIEEDGKNANFKVISICNDVDVVNKFIDEYLPHISNISPMEFLPQGYPADACISGTVLEAKSAIAASDAVKNGEIVSVEMILADQTGHKIQASIPKILCPMFDNKIIEGKIYIMSNFTVKSNVGDLLGSFHRILLVFNAKTEVKRTWGYGFPSHGVTLIGSTDVLSLKEKFKYLIDVIGVVTYVRHDKNIFSDGTTTNTITLKLTDNRDSYECELSGNYVNLFREMMKDIRLGRPVVVLQWAKVTNIQGRNVVQSVDGSTKLYVNPTFYKAAQFRKGLVPKLNSKRKTLGLPRTDKPIGFNFTTHYHCKSISQLKEDPTLGIYLVNARLMDVDALDTWWFRVKIVIDDESGTTFVELFDHVMLPIATVDPRKPQIAANYFPRAFESVVGKSIMFIIEKKRHDAQYCDGMFEVLCVSDDPAIMKYYVDRGVCSTSSKEVDKIIDKEGNLMRPIVYESPVTTTKELFAEYLHPNSATSQVLEAGESSTAAATNTDEENPDPRSVRPRIT 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03538 633 CDD RPA1_DBD_B_like 302 394 - -
Trre4g03538 633 Gene3D - 277 407 IPR012340 -
Trre4g03538 633 MobiDBLite consensus disorder prediction 602 633 - -
Trre4g03538 633 SUPERFAMILY Nucleic acid-binding proteins 298 402 IPR012340 -
Trre4g03538 633 MobiDBLite consensus disorder prediction 602 621 - -
Trre4g03538 633 Gene3D - 163 272 IPR012340 -
Trre4g03538 633 Pfam Domain of unknown function DUF223 205 271 IPR003871 -
Trre4g03538 633 CDD RPA1_DBD_A_like 194 269 - -
Trre4g03538 633 SUPERFAMILY Nucleic acid-binding proteins 195 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03538 Trre-Chr4 42346533 42351640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03538 158 401 Core DNA Replication Machinery Family AT4G19130 21.401 7.59e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03538 - - tpra:123922259 408.683