Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03535 ATGGGAAAAATGTTTGACATGCTTGCAAAGGTCAATCCTGATAGAGAATCATGGTGCTTTAATGTTCGTATTATACGCTTGTGGACTGTATACTCGACAACCAATCCTGGACACTTGGACTCCCTCGATATGATTTTAATTGATGAGAAGGGTACTAAAATTCACGCATCTATTGCTCACAAGTTGCTCTATTTGTTTCGTCACAAGATATTTGAGGGGAATGTGTATATGATGTCTAATTTTAAAGTTGAACTAGAAGAACGTGTTAATCGAGCAACTTCTCATGCTTATCAACTACATTTTATTTACAAAACTACAGTTGATAAATGCGAAGATAGTTCAATAGAAAAACTTGGATTGTCATTGACAACAATTGGAAATATTCATGGTTATGGTCCTGATCATGAGTTTTTAGTCGATGTTGCTGGATTGGTTATGCGCACCTCATCAGAGAGGGAATGCATTCGTGATGGAAAAACTACCAAAGAGGTTGTGCTTCACATTTTTGATAATAGTGGTAACTGCGAATGTCTTTTGACTGGGATTTACATTGATGAGTTTCAAAGCTTGGTTGATAGAAGCGGGAAAGTTTCCATTGAAAATTACTTGAATGTCTCTAGGATTTTGGTCAATCCTATTATACCAGAAATGATTGCTTTCAAAGAAAGTCTTGCAATCGTTGGTGTTGTTTGTGTTGGGCCTCACACTAGACCGTCTATTGACGAGGATTTCTTGACGAGGAATCCACCCATTTCAATAGCTAAGATACGTAAACCTAGAAAAGAAGGATTCTATATTGTTGGTGGTATTGTTGACTCCTTGGTGGAGCCTGAACAATGGTGGTATCCTGGTTGTGCTTGTCATGCAATTTTATCTCCTAATGCCAACGGATTTTATTGCCAAGATTGTAACAAAGTTGTCACACATATGATTCCAATGTTTAAAGTAAAGCTGAGGATCAAAGATGGAACTGGGCAAGGGATTTTCGTGCTATTTGATCAACAAATGTATGAATTATTAGGAAAACATTGCCATGAAATGCTCACCGTACAAGAGGGAGACAATTCTCATGGTTATCCCTTGGAATTGGATGATCTTAAAGGGAGAAAACTGTTATTAAAAATTGAGAAAAGTAATACTGATGGTTATGATATTTCTGAAAAGCCTTTTAGAGTTGAGCGAATATGCCAAGATTTATCTCTTATTGATGCCTTTGATTCGCCTTTCCTCAATGAAGCAACTGAGTATGAAGATGAAGATGATGAATGA 1269 0.3688 MGKMFDMLAKVNPDRESWCFNVRIIRLWTVYSTTNPGHLDSLDMILIDEKGTKIHASIAHKLLYLFRHKIFEGNVYMMSNFKVELEERVNRATSHAYQLHFIYKTTVDKCEDSSIEKLGLSLTTIGNIHGYGPDHEFLVDVAGLVMRTSSERECIRDGKTTKEVVLHIFDNSGNCECLLTGIYIDEFQSLVDRSGKVSIENYLNVSRILVNPIIPEMIAFKESLAIVGVVCVGPHTRPSIDEDFLTRNPPISIAKIRKPRKEGFYIVGGIVDSLVEPEQWWYPGCACHAILSPNANGFYCQDCNKVVTHMIPMFKVKLRIKDGTGQGIFVLFDQQMYELLGKHCHEMLTVQEGDNSHGYPLELDDLKGRKLLLKIEKSNTDGYDISEKPFRVERICQDLSLIDAFDSPFLNEATEYEDEDDE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03535 422 SUPERFAMILY Nucleic acid-binding proteins 263 378 IPR012340 -
Trre4g03535 422 Pfam Replication factor-A C terminal domain 267 378 IPR013955 -
Trre4g03535 422 CDD RPA1_DBD_A_like 22 107 - -
Trre4g03535 422 Pfam Domain of unknown function DUF223 44 112 IPR003871 -
Trre4g03535 422 Gene3D - 246 399 IPR012340 -
Trre4g03535 422 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Trre4g03535 422 Gene3D - 120 228 IPR012340 -
Trre4g03535 422 Gene3D - 7 113 IPR012340 -
Trre4g03535 422 SUPERFAMILY Nucleic acid-binding proteins 120 226 IPR012340 -
Trre4g03535 422 PANTHER OS03G0429900 PROTEIN 278 379 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03535 Trre-Chr4 42325137 42327166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03535 1 354 Core DNA Replication Machinery Family AT5G08020 20.792 4.89e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03535 - - tpra:123893724 376.326