Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03532 ATGGTGTTTTGTGATCACTGTTGTAGAAGTGTCGATGGAATGCGTGTTGATGATGGAAATTTATGTTGTGAGGATTGTGGGAAGCTGTTGGAAGATTATTATTTTTCTAATGAGGTGACTTTTGTGAAAAATGCTGCTGGACAGAGCAAATTATCTGGCAATTTGGTAAGGGGTGTTCACAATGACATCTCTGAATCACGTGCAAGGACTTTAGAAAGAGCTAAAGATTATATCAGTAATCTAAGTCGCACCCTTGGAGTGGATGATGGAAGTATGGTTGACGAAGCTTTGGCCTTTTATACAATAGGACTAGAGCAAAAGTTTACCAAGGGACGAAAATCAGAACATGTACAAGCGGCTTGTCTCTATATTGCATTCCGGGATAAAGAGAAGCCATACCTTCTTATTGAATTTTCAAATTGTTTAAGGACAAATGTTTATGCACTTGGCGCTGTTTTTTTGCAGCTTTGTAAATTGTTAAGGCTTCAAAATCACCCGATTGTTCAAAAGCCTGTTGATCCCAGTCTTTTTATTTCCAAATTTACAAATAATTTGTTAAAGCAGAGGAATCTGGCTGTCTCAAACACTGCACTTAATATTATTGTCAGAATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTGGCGGAATATGCGGTGCAGCATTATACATGGCTGCTCTTGCACATGGTTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTGCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAATCTTCCAGCTTGACCATTGATGAGTTGAATGCAATGGCAAAAGATTCTGAAAGAACTCCACTTAAAATACCAAATGGTAAACTGGACAACAAGGATCTACTGTGTCAACACAAAGAGGATCCACAGTGTCAACACTTTGCACTCGGATTATGTGAAGCTTGCTACAAGGATTTTGAGACACTCTCTGGTGGACTTGATTGTGGTCATGATCCTCCTGCATTCCAGCGTGCTGAGAGGGATAGAACGGTAAAGTCACAATCCGAGGAGAATGCTAATCAATCAGCTGATTTTGCAATGGATTCAAATGGTGCATACGAGAGCCAAATAGAGTCACATGCCTCTGAGCCTGAAAGTATTGGGGGTGATGAAGAATATGTGGCGACCAAAGATGGTGAACATGGTAAATCTCATATAGAAGATGATATGAACGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGATAAGGAGGTTGATGGCTACCTTTACAGTGAGGAGGAAAAACAATACAAGAAGGAAATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATTAAGGAAGCAGCTGCAGCAGCTGAAAGGAGAAAATTAGAGGAGGAATTAAAAAATTGTTCTCCCGAATCTCTTGAAGCAAGAAACCTTGCTGCGTCTGTTGCTGCAGCTGTAACAAAATCAAGAAAGGAATTGAGGCAGAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGCTGA 1557 0.404 MVFCDHCCRSVDGMRVDDGNLCCEDCGKLLEDYYFSNEVTFVKNAAGQSKLSGNLVRGVHNDISESRARTLERAKDYISNLSRTLGVDDGSMVDEALAFYTIGLEQKFTKGRKSEHVQAACLYIAFRDKEKPYLLIEFSNCLRTNVYALGAVFLQLCKLLRLQNHPIVQKPVDPSLFISKFTNNLLKQRNLAVSNTALNIIVRMKRDWMQTGRKPGGICGAALYMAALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKDSERTPLKIPNGKLDNKDLLCQHKEDPQCQHFALGLCEACYKDFETLSGGLDCGHDPPAFQRAERDRTVKSQSEENANQSADFAMDSNGAYESQIESHASEPESIGGDEEYVATKDGEHGKSHIEDDMNAKTQDESESLSDIDDKEVDGYLYSEEEKQYKKEIWEFNNREYLEEQAIKEAAAAAERRKLEEELKNCSPESLEARNLAASVAAAVTKSRKELRQKRAQEAKSLGPAQSAVEATS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03532 518 Coils Coil 447 467 - -
Trre4g03532 518 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Trre4g03532 518 Pfam Brf1-like TBP-binding domain 415 517 IPR011665 -
Trre4g03532 518 Gene3D Single helix bin 394 457 - -
Trre4g03532 518 SMART cyclin_7 76 158 IPR013763 -
Trre4g03532 518 SMART cyclin_7 176 259 IPR013763 -
Trre4g03532 518 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Trre4g03532 518 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Trre4g03532 518 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Trre4g03532 518 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Trre4g03532 518 MobiDBLite consensus disorder prediction 338 358 - -
Trre4g03532 518 MobiDBLite consensus disorder prediction 493 518 - -
Trre4g03532 518 SUPERFAMILY Cyclin-like 172 263 IPR036915 -
Trre4g03532 518 MobiDBLite consensus disorder prediction 390 422 - -
Trre4g03532 518 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 362 IPR000812 GO:0006352|GO:0070897
Trre4g03532 518 Gene3D - 173 265 - -
Trre4g03532 518 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Trre4g03532 518 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Trre4g03532 518 Gene3D - 63 165 - -
Trre4g03532 518 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Trre4g03532 518 FunFam Transcription factor IIIB subunit 173 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03532 Trre-Chr4 42295988 42306226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03532 1 517 Inorganic Solute Cotransporters AT2G01280 43.893 5.66e-117 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03532 K15196 - gmx:100789154 610.142