Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03525 ATGTTGTGGGTTGACAAATATCGTCCCAAAACCCTAGACAATGTTATGGTTCACAATGACACCGCTCTTAATCTCAAGAAATTGGTTTCGGAACATGATTGCCCCCATTTGCTTTTCTATGGTCCATCAGGTTCTGGCAAGAAAACCCTAATTATGGCTCTTCTTCGTCAAATGTTTGGACCCGGTGCTGAAAAGGTGAAGGTGGAAAATAGGGCGTGGAAAGTGGATGCTGGTAGTAGATCTATTGATTTAGAGCTGACAACGTTATCAAGTGCCAATCATATCGAAATGACTCCAAGTGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTGCTAGTGCTTAATGATGTGGACAAACTGTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATATAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCTCGTTGTCTTAATGTACGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTATTACAGTTCATTGGTAAAAAAGAAGGGCTGCAACTTCCTTCTAGTTTCGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTGACAAGCAGGCAATTCCCCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATTATTTTGAAGGCTACTATATGA 897 0.4013 MLWVDKYRPKTLDNVMVHNDTALNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKATI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03525 298 SUPERFAMILY post-AAA+ oligomerization domain-like 251 295 IPR008921 GO:0003677|GO:0006260
Trre4g03525 298 CDD AAA 25 190 - -
Trre4g03525 298 Gene3D - 252 298 - -
Trre4g03525 298 Pfam DNA polymerase III, delta subunit 24 188 - -
Trre4g03525 298 SMART AAA_5 33 192 IPR003593 GO:0016887
Trre4g03525 298 Gene3D - 1 189 IPR027417 -
Trre4g03525 298 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 294 - -
Trre4g03525 298 Gene3D - 190 248 - -
Trre4g03525 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 237 IPR027417 -
Trre4g03525 298 FunFam Replication factor C subunit 5 1 189 - -
Trre4g03525 298 FunFam replication factor C subunit 3 190 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03525 Trre-Chr4 42172813 42177377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03525 1 295 Core DNA Replication Machinery Family AT5G27740 84.068 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03525 K10756 - gmx:100818329 560.836