Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03520 ATGGATAGTAACAGCAATAACCCAAACTCTTCATCATTTCTCGTTCAAAACTCTCACCTAATCCTTCCATGGCTAACCCATCAACAACTCGCCAATCTCTCTTTAACCTGTAAATCTCTCCACAATCTCACCAAAATCATAACCCTAATTCGCATCTCCGATGCTTCTAGAACCTTCGAGAATTTCCCAATCCCATTCCACAACAACAATAATAATGTCAACAATCACCCTTATTCTTACTTTCTATACACACCTTCACTCATTCTCTCTAACAATCTCCCTCGTTATCAACCATGGGGATGGAAGGGTAATTCTGTAATTTCACCAATTGCGGTTAAGACGGTTGATGAATTGGAATCAGTGAGTTTTGTTGATGTGGTTGGGTGTGAGTGTGGTGAGGTTTGTGATGATGATGATGATGGGTGTTTGTGTTTCGATGGTGGGGATGGTGATGTTGGAAGAGAGTGTGGGGTGGGTTGTTCTTGTGGGAGGGAGTGTGGGAATAGGGTGAGTCAAAATGGGGTTAGGGTTAGGGTTAAGATTGTTAAGTGTGATGGTAAAGGGTGGGGTTTGTTTGCTGATCAAGTCATTGCTAAAGGAGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGACAACAATATTATGATGAACTGTCGTCGCGCGGTCGTTTCACTTCCGCTCTATTAGTTGTAAGAGAACATCTTCCATCTGGAAAAGCATGTCTGCGATTGAACATAGATGCAACAAAGATAGGAAACGTTGCACGGTTTGTAAATCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTTTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTTTCAGCTATGGAGAAATCAGGAAAAGGTCCAACGGGTTGCCATGCTACTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCCGAAGACACGTGA 1011 0.4233 MDSNSNNPNSSSFLVQNSHLILPWLTHQQLANLSLTCKSLHNLTKIITLIRISDASRTFENFPIPFHNNNNNVNNHPYSYFLYTPSLILSNNLPRYQPWGWKGNSVISPIAVKTVDELESVSFVDVVGCECGEVCDDDDDGCLCFDGGDGDVGRECGVGCSCGRECGNRVSQNGVRVRVKIVKCDGKGWGLFADQVIAKGEFLFQYAGELLTTKEAQRRQQYYDELSSRGRFTSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRSNGLPCYCNSPSCFGTLPSEDT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03520 336 SUPERFAMILY SET domain 61 329 IPR046341 -
Trre4g03520 336 Gene3D SET domain 45 331 IPR046341 -
Trre4g03520 336 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 125 330 - -
Trre4g03520 336 SMART set_7 177 315 IPR001214 GO:0005515
Trre4g03520 336 ProSiteProfiles SET domain profile. 177 309 IPR001214 GO:0005515
Trre4g03520 336 ProSiteProfiles Post-SET domain profile. 316 332 IPR003616 -
Trre4g03520 336 Pfam SET domain 188 309 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03520 Trre-Chr4 42103323 42107958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03520 155 331 C2H2 Transcription Factor Family AT2G23740 33.155 8.20e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g03520 SET 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03520 K11433 - gmx:100786871 406.757