Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03519 ATGAAGACAGAAACAAAAATGAAGATTCCGAAAACAACGACGATGGATAGTAACAGCAATAACCCAAACTCTTCATCATTTCTCGTTCAAAACTCTCACCTAATCCTTCCATGGCTAACCCATCAACAACTCGCCAATCTCTCTTTAACCTGTAAATCTCTCCACAATCTCACCAAAATCATAACCCTAATTCGCATCTCCGATGCTTCTAGAACCTTCGAGAATTTCCCAATCCCATTCCACAACAACAATAATAATGTCAACAATCACCCTTATTCTTACTTTCTATACACACCTTCACTCATTCTCTCTAACAATCTCCCTCGTTATCAACCATGGGGATGGAAGGGTAATTCTGTAATTTCACCAATTGCGGTTAAGACGGTTGATGAATTGGAATCAGTGAGTTTTGTTGATGTGGTTGGGTGTGAGTGTGGTGAGGTTTGTGATGATGATGATGATGGGTGTTTGTGTTTCGATGGTGGGGATGGTGATGTTGGAAGAGAGTGTGGGGTGGGTTGTTCTTGTGGGAGGGAGTGTGGGAATAGGGTGAGTCAAAATGGGGTTAGGGTTAGGGTTAAGATTGTTAAGTGTGATGGTAAAGGGTGGGGTTTGTTTGCTGATCAAGTCATTGCTAAAGGAGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGACAACAATATTATGATGAACTGTCGTCGCGCGGTCGTTTCACTTCCGCTCTATTAGTTGTAAGAGAACATCTTCCATCTGGAAAAGCATGTCTGCGATTGAACATAGATGCAACAAAGATAGGAAACGTTGCACGGTTTGTAAATCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTTTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTTTCAGCTATGGAGAAATCAGGAAAAGGTCCAACGGGTTGCCATGCTACTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCCGAAGACACGTGA 1053 0.4207 MKTETKMKIPKTTTMDSNSNNPNSSSFLVQNSHLILPWLTHQQLANLSLTCKSLHNLTKIITLIRISDASRTFENFPIPFHNNNNNVNNHPYSYFLYTPSLILSNNLPRYQPWGWKGNSVISPIAVKTVDELESVSFVDVVGCECGEVCDDDDDGCLCFDGGDGDVGRECGVGCSCGRECGNRVSQNGVRVRVKIVKCDGKGWGLFADQVIAKGEFLFQYAGELLTTKEAQRRQQYYDELSSRGRFTSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRSNGLPCYCNSPSCFGTLPSEDT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03519 350 Pfam SET domain 202 323 IPR001214 GO:0005515
Trre4g03519 350 ProSiteProfiles SET domain profile. 191 323 IPR001214 GO:0005515
Trre4g03519 350 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 139 344 - -
Trre4g03519 350 SUPERFAMILY SET domain 75 343 IPR046341 -
Trre4g03519 350 SMART set_7 191 329 IPR001214 GO:0005515
Trre4g03519 350 MobiDBLite consensus disorder prediction 1 23 - -
Trre4g03519 350 ProSiteProfiles Post-SET domain profile. 330 346 IPR003616 -
Trre4g03519 350 Gene3D SET domain 59 345 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03519 Trre-Chr4 42103323 42108000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03519 169 345 C2H2 Transcription Factor Family AT2G23740 33.155 7.44e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g03519 SET 4.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03519 K11433 - gmx:100786871 406.757