Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03517 ATGGCTGAGTCACAAGGTCGTGATAGTAGTTCGGGAACTAGGGGTCGTATAGGCGCCAATAATGCAAAGCGAGCCATGGCGGGAGCAACACAAGAGGTATCGGTTAGAGTGCCATGTGGGGCTTGCAAGTACTTGAAGAAGAAGTGTACAAGTGAATGTATCTTTGCACCCTACTTTGGTACAGAACAAGGTGCAGCAAGCTTTGTGGTTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTTCAACTAACCACCGCCACGAAGCGGCGGCGACTTTATCCTATGAGGCTCAGGCTAGGCTATCTGGTCTGATTTATGGTTGTGTCCACCACTCTTTATTTGCAGCAACAGGTTGA 375 0.4827 MAESQGRDSSSGTRGRIGANNAKRAMAGATQEVSVRVPCGACKYLKKKCTSECIFAPYFGTEQGAASFVVVHKVFGASNVSKLLSNISTNHRHEAAATLSYEAQARLSGLIYGCVHHSLFAATG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03517 124 PANTHER LOB DOMAIN CONTAINING PROTEIN 37 117 - -
Trre4g03517 124 MobiDBLite consensus disorder prediction 1 17 - -
Trre4g03517 124 Pfam Lateral organ boundaries (LOB) domain 38 117 IPR004883 -
Trre4g03517 124 ProSiteProfiles LOB domain profile. 37 124 IPR004883 -
Trre4g03517 124 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03517 Trre-Chr4 42100971 42101345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03517 38 115 AS2 family AT3G03760 70.513 3.07e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g03517 LOB 4.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03517 - - tpra:123885950 169.859