Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03516 ATGGTTGAGTCACAAGATGGTGATGGTAATTCGGGAATTAGGCATCGTATAGGCGCCAATGGTGCAAAGCCTGCCATGGCGGGAGCAACACAAGGGGTATTGGTTATGGTGCCATGTGGGGATTGCAAGTTCTTGAAGAGGAAGTGTACTAGTGAATGCATCTTTGAACCCTACTTTGGTACAAACCAAGATGCAGGCAACTTTGCGGCTGTGCACAAGGTATTTGGTGCTAGCAATGTCTCGAAGCTCTTGTCCAATATTTCAACTAACCATCTAAAAGGCATGTTTGAAATTGAACATAGATGCAACAAAAATAGGAAACGTTGCACGGTTTGTAAACCATTCGTGTGA 351 0.4416 MVESQDGDGNSGIRHRIGANGAKPAMAGATQGVLVMVPCGDCKFLKRKCTSECIFEPYFGTNQDAGNFAAVHKVFGASNVSKLLSNISTNHLKGMFEIEHRCNKNRKRCTVCKPFV 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03516 116 PANTHER LOB DOMAIN CONTAINING PROTEIN 37 90 - -
Trre4g03516 116 Pfam Lateral organ boundaries (LOB) domain 38 91 IPR004883 -
Trre4g03516 116 ProSiteProfiles LOB domain profile. 37 116 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03516 Trre-Chr4 42099299 42099649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03516 38 90 AS2 family AT3G03760 71.698 5.58e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g03516 LOB 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03516 - - tpra:123885950 142.895