Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03515 ATGGCTGAGTTCCAAGGTGGTGATGGTAGTTCGGGATCTAGGCGTAGTACAACGCGATGTGGGGCTTGCAAGTTCTTGACAAGGAAGTGTACCGGTGAATGCATCTTTGCACCCTACTTTGGTACAGAAAATGGTGAAGCTAGCTTTGTGGTTGTGCACAAGGTGTTTGGTGCTAAAAATGTGTCGAAGCTCTTGTCCAACGTTTCAACTAACCACCGCCACGAAGCAGTTGCGACTATATACTATGAGGCTCAGGCTAGGCTATCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTTCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAAGTCCGAATGATGCAAACTGAGCTGATGAACAAAGGATTTACTTGTGCAAATGCTCTTCAAACCACACCCCAGCAGCAGCATCAGATGCTACAGCAGCCAAACTTCAACGTAGCAGTGCAGCCAGCATATTCCAACAATTCATATGCTTCTACCAACAACCTCACGAACATGAACAACTTCAACTCTGGTTTTGACCTCACAATGGAGACGGCACCCTCATCACACAGCTTAGAGCCTTTTCAAAACTCCTGGTTCTCTCATTATGAGGGAGATTACTGA 615 0.4667 MAEFQGGDGSSGSRRSTTRCGACKFLTRKCTGECIFAPYFGTENGEASFVVVHKVFGAKNVSKLLSNVSTNHRHEAVATIYYEAQARLSDPVYGCVSTILSLQQQVAAMQAEVRMMQTELMNKGFTCANALQTTPQQQHQMLQQPNFNVAVQPAYSNNSYASTNNLTNMNNFNSGFDLTMETAPSSHSLEPFQNSWFSHYEGDY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03515 204 Coils Coil 99 119 - -
Trre4g03515 204 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Trre4g03515 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 174 - -
Trre4g03515 204 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03515 Trre-Chr4 42096628 42098356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03515 20 204 AS2 family AT3G03760 52.604 1.39e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g03515 LOB 8.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03515 - - aprc:113866578 227.639