Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03511 ATGGCTGAGTCACAATGTGGTGATGTTAGAGTGCCATGTAGGGCTTGTAAGTACATGAAGAAGTGTACTAGCGAATGTATCTTCGCACCTTACTTTGGTACAGAACAAGGTGCAGCTAGCTTTGCAGCTGTGCACAAAGTATTTGGTGCTAGCAATGTGTCAAAGCTCTTGTCCAACGTTTCACCCAACCACCGCCACGAAGCAGCGGCGACTATCTCCTATGAGGCTCAGGCTCGGATATCCGATCCTGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAAGTGGCAGCAATGCAAGCAGAGGTCTCAATCATGCAAACTGAGCTGAAAAACAGAAGATTTGGAGGTGCAAATGCTCTTCAAACTACACACCAGGAGCAGCATCAGATGCTGCAGCAGCCAAACTTCAACATGCAGCCAGAATATTCCAACAATTCATATGCTTCCACCAACAACTTCATGAACATGAACAACTTCAACCCTGGGTTTGACCTCACAATGGAGACAGCACCCTCATCACACGACTTAGATCCTTTTCAAAACTCCTGGTTCTCTAATTTTTGA 573 0.459 MAESQCGDVRVPCRACKYMKKCTSECIFAPYFGTEQGAASFAAVHKVFGASNVSKLLSNVSPNHRHEAAATISYEAQARISDPVYGCVSTILALQQQVAAMQAEVSIMQTELKNRRFGGANALQTTHQEQHQMLQQPNFNMQPEYSNNSYASTNNFMNMNNFNPGFDLTMETAPSSHDLDPFQNSWFSNF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03511 190 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Trre4g03511 190 Coils Coil 91 111 - -
Trre4g03511 190 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 151 - -
Trre4g03511 190 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03511 Trre-Chr4 42083535 42084403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03511 12 179 AS2 family AT3G03760 58.824 2.45e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g03511 LOB 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03511 - - aprc:113866578 232.261