Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre4g03509 | ATGGCTGACTCACAAGGTGGAGATGGAAGTTCAGGAAACAGGCGTGGTAAAGGCGCCAATACTGCAAAGCGTGCAATGGCACAAGATGCATCGGCTGTACCCCCGTGTGGTGCTTGCAAGTTTTTGAGGAGGAAGTGTAGTGGTGCGTGTATATTTGCACCCTACTTTGGGACTGACCAAGGTGCGGCTAGATTTGCAGCTGTGCACAAGGTTTTTGGTGCCAGCAATGTGTCCAAACTCTTGTCCAGTATTCCGACTAACCACCGCCATGAAGCCGCAGCAACTATTTCTTATGAGGCTCAGGCTCGGTTATCCGATCCTGTTTATGGTTGTGTGTCAACCATTCTTGCTTTGCAGCAACAGGTGGCTGCAATGCAAGCGGAAGTCTCGATGATGCAATCTCAGCTGATGAATCGGAGATATGCATATGCAAGTGCTCTTCAGACCACGCACCAGCAGCAGCATCAAATACTGCAGCAACCAAACTTCAATGTGTCTGTGCAGCCGGCATACTCCAACAACTCATCTGCTTCCACCAACAATTTCATGAACATGAACAGCTTCAACCCTGGTTTTGACCTCAGAATGGAGACGGCTCCTTCATCGCACAGCTTAGAGCCTTTTCAAAACTCCAGGATGACTCCATATGAGGAAGATGATTAA | 663 | 0.4872 | MADSQGGDGSSGNRRGKGANTAKRAMAQDASAVPPCGACKFLRRKCSGACIFAPYFGTDQGAARFAAVHKVFGASNVSKLLSSIPTNHRHEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMQSQLMNRRYAYASALQTTHQQQHQILQQPNFNVSVQPAYSNNSSASTNNFMNMNSFNPGFDLRMETAPSSHSLEPFQNSRMTPYEEDD | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre4g03509 | 220 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Trre4g03509 | 220 | Coils | Coil | 115 | 135 | - | - | |
Trre4g03509 | 220 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 33 | 189 | - | - | |
Trre4g03509 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 133 | IPR004883 | - | |
Trre4g03509 | 220 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Trre4g03509 | 220 | ProSiteProfiles | LOB domain profile. | 34 | 136 | IPR004883 | - | |
Trre4g03509 | 220 | MobiDBLite | consensus disorder prediction | 195 | 220 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre4g03509 | Trre-Chr4 | 42075489 | 42076511 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre4g03509 | 1 | 220 | AS2 family | AT3G03760 | 52.033 | 6.55e-66 | 203 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Trre4g03509 | LOB | 1.7e-37 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre4g03509 | - | - | aprc:113866578 | 259.61 |