Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03508 ATGAGTTCAAATTTTCTATATGGTAAAATCCCTCAAGAACTTCCATTACTTTCAAATCTTCAAGCACTCATTCTTGATAACAATATGTTTGATGGACATTTGCCGGATTGGTTGGATTCGTTTCCATCGTTAACCGTTTTGAATTTGAATCAAAATTTGTTCAACGGTTCGCTTCCTGATTCATTGAGTAGCTTAACAAATATGCGAGTTCTTTCGCTTTCTCATAACCATTTCTACGGATCAGTACCGGATTTAAGCCGGTTGGTTAATCTTCAAGTGTTGGAATTGGATGATAATAGTTTTGGTCCTAACTTTCCAAGAACTTATAACAAGTTGGTTACTTGTGTCCTAAGAAACAACAAGTTTAGGTCTAGTTTACCTGATAATATGAGTTCATATTATCAACTTGAGAGATTCGACATCTCGGAAAACGCATTTGTTGGACCTTTTCAATTAGAATTGTTTTCACTTCCTTCAATTAGTTATATCAACATTTCAAGTAACAAATTATCAGGAATGCTTTTCGAGAATCTGTCGTGTAATTCTCTTCTACAAGAAGTTGATTTGTCATCAAATCTTTTGACTGGAAGATTACCAAAATGTTTAGTGTCAAATTCCTATGATAGGAAATTTTTGTATGGTGGAAATTGTTTAGAAGATACAAATCAAAATCAAAATCAACATGAACAAGCTTTTTGTCACACTGAAGCTATAGCTGTTGGAATAGGACCTGATGAGAGAAAGAAGCATAAAAGAGTATCTAAAACAGTTCTAGCTTTTGAGATTATTGGTGGAATTTTTGGAGGAATTTCACTTGTTGCATTGATTTTTATGATTATGATTAGAAGAGGAAATGGTAAAAGCATGATGATGAAGAAGAATTCGAAAACAAAATTGATATCAGAAAATGTAGCTTCTGGAAAGTTAATCTCTGATTCAAGGTATGTACCTAAATCAATGAAGTTTGGAACTGTTGGTCTGCCACCTTATAGAGCTTTCTCATTGGAAGAGATTGTGACAGCTACTAACAACTTTGATACTACTTCTTTCATTGGTGAAGGTTCTCAAGGACAGATGAACAGAGGTCAACTAAAAGATGGTTCACTAGTTGCCATTAGAAGTGTAAAATTGACAAAAAGCTGCAGGACTAGAGATTTCATGCAGCACATAGAATTGATATCAAAATTCAGGCATCATCATTTAGTTAGTGTTCTTGGACATTGCTTTGAACATTATTTGGATGATTCAAATGTCAGAAGAATATTTATTGTCTTTGAGTATGTACCTAATGGATCACTCAAGACTTGGATCACAGATAGGCATTATAGAAAATCTCTTACTTGGACTCAACGCATAGAAGCTTCAATTGGAGTGGCAAAGGGAATCAAATTTTTGCATACAGAGATTGTTCCTTCAGTATATTCAAATAATCTCAAAATTACAGATGTTTTATTGGATCAAAACTTTGTTGCAAAAATCAGTAGTTATAACATGCCTTTGTTATCCAACATTGGAAAGGTTGGTCAAGGAAATATATTCAAAAGTCCTAGCTTTAACAAAAGTGTAAAAAGTGAAGACAAGATTGATATATATGACTTTGGGGTGATATTGATGGAACTCATTCTAGGAAGGACAATAAAGTCAAGAAATGTGGCCACTTTGAAAGATTTGCTACAATCAAGTATAGCATCAGATGATGAAGCAAGAAGAAGCATTATAGATTCATCGATTCGTAACGCGTGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGATGTTTAGTTAAAGAGCCAGAAGAAAGACCTTCTATAGAAGATATCTTGTGGAATTTGCAGTTTGCTTCTCAAGTGCAAGATGCATGGAGAGGAGACTCTCTAAGTAGTGATAGCTCTCCCATCTCGCCTTTACCGTCTCAACGAATGAACTTCCATTAG 1944 0.3447 MSSNFLYGKIPQELPLLSNLQALILDNNMFDGHLPDWLDSFPSLTVLNLNQNLFNGSLPDSLSSLTNMRVLSLSHNHFYGSVPDLSRLVNLQVLELDDNSFGPNFPRTYNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISENAFVGPFQLELFSLPSISYINISSNKLSGMLFENLSCNSLLQEVDLSSNLLTGRLPKCLVSNSYDRKFLYGGNCLEDTNQNQNQHEQAFCHTEAIAVGIGPDERKKHKRVSKTVLAFEIIGGIFGGISLVALIFMIMIRRGNGKSMMMKKNSKTKLISENVASGKLISDSRYVPKSMKFGTVGLPPYRAFSLEEIVTATNNFDTTSFIGEGSQGQMNRGQLKDGSLVAIRSVKLTKSCRTRDFMQHIELISKFRHHHLVSVLGHCFEHYLDDSNVRRIFIVFEYVPNGSLKTWITDRHYRKSLTWTQRIEASIGVAKGIKFLHTEIVPSVYSNNLKITDVLLDQNFVAKISSYNMPLLSNIGKVGQGNIFKSPSFNKSVKSEDKIDIYDFGVILMELILGRTIKSRNVATLKDLLQSSIASDDEARRSIIDSSIRNACLDQSLKTMMEICVRCLVKEPEERPSIEDILWNLQFASQVQDAWRGDSLSSDSSPISPLPSQRMNFH 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03508 647 Pfam Protein tyrosine and serine/threonine kinase 349 612 IPR001245 GO:0004672|GO:0006468
Trre4g03508 647 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 318 427 - -
Trre4g03508 647 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 428 630 - -
Trre4g03508 647 MobiDBLite consensus disorder prediction 628 647 - -
Trre4g03508 647 SUPERFAMILY L domain-like 1 219 - -
Trre4g03508 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 614 - -
Trre4g03508 647 SUPERFAMILY Protein kinase-like (PK-like) 324 618 IPR011009 -
Trre4g03508 647 Gene3D Ribonuclease Inhibitor 1 234 IPR032675 -
Trre4g03508 647 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 11 105 - -
Trre4g03508 647 Gene3D Phosphorylase Kinase; domain 1 313 427 - -
Trre4g03508 647 Gene3D Transferase(Phosphotransferase) domain 1 429 624 - -
Trre4g03508 647 ProSiteProfiles Protein kinase domain profile. 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03508 647 Pfam Leucine rich repeat 18 78 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03508 Trre-Chr4 42065441 42072291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03508 1 640 Miscellaneous Gene Families AT3G03770 58.742 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre4g03508 PK_Tyr_Ser-Thr 1.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03508 - - gmx:100813207 923.309