Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03507 ATGGAAAATAAGCTTCATCCAAAAGTGCTTCTAGTTTTAGTCACAATTTTTCTTTCAATTTCTTACACAAACCAACTTCAATCCTCACACACTCGAACCCTTTTACGAATCAAACGTCTCTTAAACTTTCCATCAATTTTAAGCTCATGGAATTCAACCACAGATTTTTGCAACACAGATTCAAAAGCTTCTCTAATTGTTGTATGCTATGAACAAACCATAACTCAGTTACACATAGTTGGTGAAACAAAACCTCAACAACTTCTTCCAAAAAACTTCTCAATAGATTCATTTTTCACAACACTTTTGAGAATTCCAACTCTAAAAGTTCTCACACTAGTTTCCTTAGGCTTGTGGGGTCCACTTCCTAGCAAAATTAGTGGCTTATCATCTTTGGAAATAGTTAACATGAGTTCAAATTTTCTATATGGTAAAATCCCTCAAGAACTTCCATTACTTTCAAATCTTCAAGCACTCATTCTTGATAACAATATGTTTGATGGACATTTGCCGGATTGGTTGGATTCGTTTCCATCGTTAACCGTTTTGAATTTGAATCAAAATTTGTTCAACGGTTCGCTTCCTGATTCATTGAGTAGCTTAACAAATATGCGAGTTCTTTCGCTTTCTCATAACCATTTCTACGGATCAGTACCGGATTTAAGCCGGTTGGTTAATCTTCAAGTGTTGGAATTGGATGATAATAGTTTTGGTCCTAACTTTCCAAGAACTTATAACAAGTTGGTTACTTGTGTCCTAAGAAACAACAAGTTTAGGTCTAGTTTACCTGATAATATGAGTTCATATTATCAACTTGAGAGATTCGACATCTCGGAAAACGCATTTGTTGGACCTTTTCAATTAGAATTGTTTTCACTTCCTTCAATTAGTTATATCAACATTTCAAGTAACAAATTATCAGGAATGCTTTTCGAGAATCTGTCGTGTAATTCTCTTCTACAAGAAGTTGATTTGTCATCAAATCTTTTGACTGGAAGATTACCAAAATGTTTAGTGTCAAATTCCTATGATAGGAAATTTTTGTATGGTGGAAATTGTTTAGAAGATACAAATCAAAATCAAAATCAACATGAACAAGCTTTTTGTCACACTGAAGCTATAGCTGTTGGAATAGGACCTGATGAGAGAAAGAAGCATAAAAGAGTATCTAAAACAGTTCTAGCTTTTGAGATTATTGGTGGAATTTTTGGAGGAATTTCACTTGTTGCATTGATTTTTATGATTATGATTAGAAGAGGAAATGGTAAAAGCATGATGATGAAGAAGAATTCGAAAACAAAATTGATATCAGAAAATGTAGCTTCTGGAAAGTTAATCTCTGATTCAAGGTATGTACCTAAATCAATGAAGTTTGGAACTGTTGGTCTGCCACCTTATAGAGCTTTCTCATTGGAAGAGATTGTGACAGCTACTAACAACTTTGATACTACTTCTTTCATTGGTGAAGGTTCTCAAGGACAGATGAACAGAGGTCAACTAAAAGATGGTTCACTAGTTGCCATTAGAAGTGTAAAATTGACAAAAAGCTGCAGGACTAGAGATTTCATGCAGCACATAGAATTGATATCAAAATTCAGGCATCATCATTTAGTTAGTGTTCTTGGACATTGCTTTGAACATTATTTGGATGATTCAAATGTCAGAAGAATATTTATTGTCTTTGAGTATGTACCTAATGGATCACTCAAGACTTGGATCACAGATAGGCATTATAGAAAATCTCTTACTTGGACTCAACGCATAGAAGCTTCAATTGGAGTGGCAAAGGGAATCAAATTTTTGCATACAGAGATTGTTCCTTCAGTATATTCAAATAATCTCAAAATTACAGATGTTTTATTGGATCAAAACTTTGTTGCAAAAATCAGTAGTTATAACATGCCTTTGTTATCCAACATTGGAAAGGTTGGTCAAGGAAATATATTCAAAAGTCCTAGCTTTAACAAAAGTGTAAAAAGTGAAGACAAGATTGATATATATGACTTTGGGGTGATATTGATGGAACTCATTCTAGGAAGGACAATAAAGTCAAGAAATGTGGCCACTTTGAAAGATTTGCTACAATCAAGTATAGCATCAGATGATGAAGCAAGAAGAAGCATTATAGATTCATCGATTCGTAACGCGTGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGATGTTTAGTTAAAGAGCCAGAAGAAAGACCTTCTATAGAAGATATCTTGTGGAATTTGCAGTTTGCTTCTCAAGTGCAAGATGCATGGAGAGGAGACTCTCTAAGTAGTGATAGCTCTCCCATCTCGCCTTTACCGTCTCAACGAATGAACTTCCATTAG 2352 0.3444 MENKLHPKVLLVLVTIFLSISYTNQLQSSHTRTLLRIKRLLNFPSILSSWNSTTDFCNTDSKASLIVVCYEQTITQLHIVGETKPQQLLPKNFSIDSFFTTLLRIPTLKVLTLVSLGLWGPLPSKISGLSSLEIVNMSSNFLYGKIPQELPLLSNLQALILDNNMFDGHLPDWLDSFPSLTVLNLNQNLFNGSLPDSLSSLTNMRVLSLSHNHFYGSVPDLSRLVNLQVLELDDNSFGPNFPRTYNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISENAFVGPFQLELFSLPSISYINISSNKLSGMLFENLSCNSLLQEVDLSSNLLTGRLPKCLVSNSYDRKFLYGGNCLEDTNQNQNQHEQAFCHTEAIAVGIGPDERKKHKRVSKTVLAFEIIGGIFGGISLVALIFMIMIRRGNGKSMMMKKNSKTKLISENVASGKLISDSRYVPKSMKFGTVGLPPYRAFSLEEIVTATNNFDTTSFIGEGSQGQMNRGQLKDGSLVAIRSVKLTKSCRTRDFMQHIELISKFRHHHLVSVLGHCFEHYLDDSNVRRIFIVFEYVPNGSLKTWITDRHYRKSLTWTQRIEASIGVAKGIKFLHTEIVPSVYSNNLKITDVLLDQNFVAKISSYNMPLLSNIGKVGQGNIFKSPSFNKSVKSEDKIDIYDFGVILMELILGRTIKSRNVATLKDLLQSSIASDDEARRSIIDSSIRNACLDQSLKTMMEICVRCLVKEPEERPSIEDILWNLQFASQVQDAWRGDSLSSDSSPISPLPSQRMNFH 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03507 783 ProSiteProfiles Protein kinase domain profile. 481 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03507 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 246 - -
Trre4g03507 783 Gene3D Transferase(Phosphotransferase) domain 1 565 760 - -
Trre4g03507 783 SUPERFAMILY L domain-like 30 354 - -
Trre4g03507 783 Gene3D Ribonuclease Inhibitor 248 366 IPR032675 -
Trre4g03507 783 Gene3D Phosphorylase Kinase; domain 1 449 563 - -
Trre4g03507 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 766 - -
Trre4g03507 783 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Trre4g03507 783 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 104 750 - -
Trre4g03507 783 SUPERFAMILY Protein kinase-like (PK-like) 460 754 IPR011009 -
Trre4g03507 783 MobiDBLite consensus disorder prediction 764 783 - -
Trre4g03507 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 454 563 - -
Trre4g03507 783 Gene3D Ribonuclease Inhibitor 27 247 IPR032675 -
Trre4g03507 783 Pfam Protein tyrosine and serine/threonine kinase 485 748 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03507 Trre-Chr4 42065033 42072291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03507 43 776 Miscellaneous Gene Families AT3G03770 58.981 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre4g03507 PK_Tyr_Ser-Thr 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03507 - - gmx:100813207 1105.51