Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03495 ATGGATAGACTCATAAGATTAGAACCATCAAACATAGTACTAATAAGAGTTGAACAAGGGCAAAAATGTCAAGGAAAATTAACCTTAAACAATGTCATGTATACTATGCCAGTTGCATTTAGGATTCAACCACTAATCAAAACAAGATACACAATTAAACCTCAATCAGGAATAATTTCACCATTAGCATCACTAATCATAGAGATAACATATCATCCTCCACAACAAGGTTCAAATAATAATCTTCCTCACTCTTTTCCCTTTTCAGATGATTCATTTCTTCTCCATAGTGTTCTTGCTCCAGGAGCAGCCATTAAAGAACCTTCATCCATGTTTGATTCTGTTCCAAGTGATTGGTTCACTACAAAAAGAAAACAAGTTTTCATTGATAGTGCAATCAAAATCATGTTTGTTGGTTCACAAATTTTGACTCAACTTGTTGAAGATGGTAATTCAATGGATGATATAAGAGATGTTCTTGAAAAAAGTGATCCTTTATGGGAATCAGTTAACTCTAAAGATTCAAAAGGTCAAACTTTGCTTCATTTGGCTATTTCGAAAAATAGACCTGATCTTGTTCAATTGATTCTTGAATTCAAGCCTGATATTGAAGCTACAAATAGTGTTGGATCAACCCCTCTTGAGGCTGCATCTTCCTCGGGCGATTCGTTGATTGTTGAGCTTCTTTTAGCTCATAAGGCCAATACAGAAGGATCAGAATCTTCGGTCTTTCGACCGATTCATCATGCTTCGAGAGAAGGACACATGGAGATTCTAAGGCTTCTTTTACTCAAAGGTGCAAAAGTTGACTCTTTAACAAAAGATGGTAACACTTCTTTGCATTTAGCTGTTGAAGAAAAAAGAAGAGATTGTGCTAGGCTTTTGTTAGCGAACGGTGCGAAAACCGATGTTCGAAATACAAGAGAAGGTGATACACCTTTACACATAGCAGCAGCCAATGGAGATGAGAACATGGTGAAGTTACTACTTCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACAGCGTTCGATGTTGCGGCTGAGAACGGACACTCGCGCCTGTTCGATGCACTTCGTTTAGGGGACAATTTATGCGCGGCTGCGCGGAAGGGCGAGGTGAGGACAATCCAAAAGGTTTTGGAAAGTGGTGGAGTGATCAATGGAAGGGATCAAAATGGATGGACATCACTTCATAGGGCTTCATTCAAAGGAAGAATTGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGTTATACAGCTTTGCATTGTGCAGCTGAATCAGGACATGCTGATGTGACCGAGTTTTTGGTTAAGAAAGGTGCTGATGTTGAAGCAAGGACTAATAAAGGTGTGAGTGCTTTGCAAATTGTTGAGTCATTGAACTATATAGGGATTACAAGGATACTTGTTAATGGTGGTGCTAGTAGGGAAGGTTTGGGTGAAAAATTTCCATCTGCACCTTCTAAGATTCCATTTGGGAGTAAAGTTGACGGTGGGGGTGTGATGACGATGAAGAAGAAGATGAGTAGTAGAACTCGAGCGCTACAAGGTAGTTTCGATCGTTCGATGCCTTTGGCAGTGCTCTAG 1626 0.393 MDRLIRLEPSNIVLIRVEQGQKCQGKLTLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLIIEITYHPPQQGSNNNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKRKQVFIDSAIKIMFVGSQILTQLVEDGNSMDDIRDVLEKSDPLWESVNSKDSKGQTLLHLAISKNRPDLVQLILEFKPDIEATNSVGSTPLEAASSSGDSLIVELLLAHKANTEGSESSVFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGAKTDVRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDNLCAAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRIDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYIGITRILVNGGASREGLGEKFPSAPSKIPFGSKVDGGGVMTMKKKMSSRTRALQGSFDRSMPLAVL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03495 541 SUPERFAMILY PapD-like 2 151 IPR008962 -
Trre4g03495 541 Gene3D Immunoglobulins 1 128 IPR013783 -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 429 461 - -
Trre4g03495 541 Pfam Ankyrin repeats (3 copies) 246 305 IPR002110 GO:0005515
Trre4g03495 541 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 170 356 - -
Trre4g03495 541 Pfam Ankyrin repeats (many copies) 398 450 IPR002110 GO:0005515
Trre4g03495 541 Pfam Ankyrin repeats (many copies) 169 215 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 209 235 - -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 242 274 IPR002110 GO:0005515
Trre4g03495 541 PRINTS Ankyrin repeat signature 310 325 IPR002110 GO:0005515
Trre4g03495 541 PRINTS Ankyrin repeat signature 445 459 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Trre4g03495 541 Pfam MSP (Major sperm protein) domain 5 111 IPR000535 -
Trre4g03495 541 Gene3D - 314 363 IPR036770 -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 396 428 - -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 176 207 - -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 209 241 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 242 270 - -
Trre4g03495 541 SMART ANK_2a 342 371 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 396 425 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 429 458 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 309 338 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 275 304 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 209 238 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 242 271 IPR002110 GO:0005515
Trre4g03495 541 SMART ANK_2a 176 205 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat profile. 275 307 IPR002110 GO:0005515
Trre4g03495 541 Gene3D - 364 433 IPR036770 -
Trre4g03495 541 Gene3D - 240 313 IPR036770 -
Trre4g03495 541 Gene3D - 434 491 IPR036770 -
Trre4g03495 541 Gene3D - 131 239 IPR036770 -
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 309 334 - -
Trre4g03495 541 Pfam Ankyrin repeat 310 334 IPR002110 GO:0005515
Trre4g03495 541 ProSiteProfiles Ankyrin repeat region circular profile. 275 306 - -
Trre4g03495 541 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 138 IPR000535 -
Trre4g03495 541 SUPERFAMILY Ankyrin repeat 169 490 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03495 Trre-Chr4 41893489 41895114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03495 367 469 Ion Channels AT4G32500 32.039 8.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03495 - - gmx:100782444 764.992