Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03467 ATGGATACCGGAATTACAGGATATAAACGTCTGAAAAATCCTGAGGAGAAAAAGTTGCGGATCAAAAAGCGCAAATTAATTGACATTCCTAATCGCATCAATGCATTACTAGTAGATGGTGTAACCTCATCCAGACGTTTGGAACATCACATGCTTGAATCAATAGGAATTCGAACAGAGCCTGCAAATAATGCTCAAGAAGCAATACAAATTTTGTTGACTGGTGTGAAATTTGACTTCATATTTGTTGATTTTGATTTGTCAATAATCAATGGACCTGAGCTTGTGACGCAAATGCGTGCAATGGGGGTACAAAGTAAAGTGGTGGGTATGCTAACAAACTTCAATGATCATAATGTACAAATGTTTCATGATGCAAGAGCAAATGCAAGTATGCAAAAACCTTTGACTCGAGAAAGTTTTGAAATCATCACCGGAATCCTTCGCTATATATGA 456 0.3706 MDTGITGYKRLKNPEEKKLRIKKRKLIDIPNRINALLVDGVTSSRRLEHHMLESIGIRTEPANNAQEAIQILLTGVKFDFIFVDFDLSIINGPELVTQMRAMGVQSKVVGMLTNFNDHNVQMFHDARANASMQKPLTRESFEIITGILRYI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03467 151 Gene3D - 29 148 - -
Trre4g03467 151 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Trre4g03467 151 SMART REC_2 33 147 IPR001789 GO:0000160
Trre4g03467 151 Pfam Response regulator receiver domain 36 139 IPR001789 GO:0000160
Trre4g03467 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 142 - -
Trre4g03467 151 SUPERFAMILY CheY-like 32 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03467 Trre-Chr4 41625077 41626064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03467 22 138 Response Regulator Gene Family AT3G04280 31.405 2.26e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre4g03467 Response_reg 2.5e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03467 - K07677 tpra:123904015 172.94