Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03465 ATGAATGATCTTCTAACGGAATCGTTTGACATCCCCCGTGGCCGAGGACATGGAGGTGGTGACGTTGAATTGGGAGAATACGGAAGGAATTCAGGAGAGCTTAGCTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGAGAAACAATATGCTAAGCTGGATAACCTTTTGAGAAGGCTTCAGGATGCTCATGAGGAGTCCAAAGCTGTTAGCAAAGCTCCTGCCATGAAGGCTATAAGGCAGAGAATGGATAAAGATGTCGATGAAGTTAAGAAAACTGCACTTTACTTAAAGACCAAAGTTGAAGAGCTCGACAAAGAGAATTTGGCGAATCGGCAGAAACCTGGTTGTGGAAAAGGATCAGCTGTTGACCGATCAAGAACAGCGACAACAATTAACTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTGAGAACAGCCATCCATGAAGAATATCGTGACGTTGTTGAGAGACGTGTATTTACAGTAACGGGAAAAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACCGGAGACAGTGAACAAATTTTCCAGAAGGCGATCCAGGAACAAGGACGAGGCCAGATAATGGACACCCTTGCCGAAATTCAAGAACGACACGAAGCAGTCAGAGATGTTGAGAGGAAACTGCTTGATTTACAACAGACATTTATGGATATTGCAGTGTTAGTTGATGAACAAGGAGACATGCTTAACAACATAGAATCGCAGGTTTCAAGTGCAGTAGATCATGTGCAGAGAGGTAATAATAATCTTATAAAGGCAAAGAAACTGCAAAAAAACTCAAGAAAATGGATGTGTATTGCCATAATGATATTTCTCATCATGGTTATAATCATTGTTGTTTCTGTCATTAAACCATGGGTTACCAATCAGGCATAG 921 0.4104 MNDLLTESFDIPRGRGHGGGDVELGEYGRNSGELSLDTFFKKVQELEKQYAKLDNLLRRLQDAHEESKAVSKAPAMKAIRQRMDKDVDEVKKTALYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTINLKKKLKDKMAEFQTLRTAIHEEYRDVVERRVFTVTGKRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQTFMDIAVLVDEQGDMLNNIESQVSSAVDHVQRGNNNLIKAKKLQKNSRKWMCIAIMIFLIMVIIIVVSVIKPWVTNQA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03465 306 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Trre4g03465 306 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g03465 306 Pfam SNARE domain 242 294 IPR000727 -
Trre4g03465 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Trre4g03465 306 Gene3D - 33 160 - -
Trre4g03465 306 CDD SynN 36 193 IPR006011 GO:0016020
Trre4g03465 306 Coils Coil 36 73 - -
Trre4g03465 306 PANTHER SYNTAXIN 39 287 IPR045242 -
Trre4g03465 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Trre4g03465 306 CDD SNARE_syntaxin1-like 205 267 - -
Trre4g03465 306 SMART SynN_4 31 157 IPR006011 GO:0016020
Trre4g03465 306 Pfam Syntaxin 39 241 IPR006011 GO:0016020
Trre4g03465 306 SMART tSNARE_6 201 268 IPR000727 -
Trre4g03465 306 Gene3D - 196 299 - -
Trre4g03465 306 FunFam Syntaxin 132 199 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03465 Trre-Chr4 41612334 41616449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03465 1 302 SNARE and Associated Proteins AT3G03800 70.861 2.43e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03465 K08486 - gmx:100306329 511.146