Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03464 ATGGAAATTCAATTTGAGAAACCAAAGAAGAATTTGAGACCAAAAAAAGGTAACAAATTCAAAGGGAGAAACAAAAAGATTGAAACAAAAAGCAAGTTTGTTGGGGTGAGACAAAGGCCATCAGGTAGATATGTTGCTGAGATTAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTTGAAACAGCCGAGGAAGCTGCGAAAGCTTACGATGAAGCCGCGACTCTTCTTCGCGGTTCCAACACTCGCACCAATTTCGTTACGCATGTTTCTCATGATTCGCCTCTCGCTTCTCGGATTCAAAGTCTTCTTAACAAGCGAGGAAAAGGTACCAAACAAGAAGAAGAAGAAGAAGATATGGATGTTAGAAGAAGCATCACCAATCGTGCAAACACAGCTGGTGGTACTACTAATAGGACTAAGGCCGGTAGTACCACTAACAATATTGGCACGACTCAAGGTACTACTAAAAGTACTAGTGCTAGAAGTGTCGCTAGCACTAATACTGATATTAGCGGTATTACTAATAGTACTAGTGCTGGCAGCGTGACTAGCACTAGTACGGTTATTAGTACTAATTCGAGCGATAACATCAATCAAGAAAACATTGAAAATACGATTTCTAGTGTGACCACAATACAAAACAAAAAATTATTGGAGGATGCATATAGGCCAGATTTGAGCATTTTAAATGAGTATGAATCAAGTTTCAATAAGTCCAATGTTTCATGGGATTTTGGACCTATTTTTGATAATTTTCCATTTGGTCAAGGGTTGGATATGAAAATCCAAGATGGAATATTGTGTGATATGGTTGACTTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGGCAAATATCGGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGAAACTGTTCAAGATTCCAATGAAGCTCCATGGAATCTTTCACCCTTGTGTTCATTTTTATGTTCAAATAAACAACATGTATGA 996 0.3785 MEIQFEKPKKNLRPKKGNKFKGRNKKIETKSKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVTHVSHDSPLASRIQSLLNKRGKGTKQEEEEEDMDVRRSITNRANTAGGTTNRTKAGSTTNNIGTTQGTTKSTSARSVASTNTDISGITNSTSAGSVTSTSTVISTNSSDNINQENIENTISSVTTIQNKKLLEDAYRPDLSILNEYESSFNKSNVSWDFGPIFDNFPFGQGLDMKIQDGILCDMVDLGVSEFERMKVERQISASLYAINGVQEYMETVQDSNEAPWNLSPLCSFLCSNKQHV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03464 331 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 MobiDBLite consensus disorder prediction 110 127 - -
Trre4g03464 331 MobiDBLite consensus disorder prediction 107 196 - -
Trre4g03464 331 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Trre4g03464 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 290 - -
Trre4g03464 331 MobiDBLite consensus disorder prediction 128 196 - -
Trre4g03464 331 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Trre4g03464 331 Gene3D AP2/ERF domain 31 91 IPR036955 GO:0003700|GO:0006355
Trre4g03464 331 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Trre4g03464 331 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03464 Trre-Chr4 41606170 41607165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03464 221 325 AP2-EREBP Transcription Factor Family AT5G19790 30.435 3.56e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g03464 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03464 K09286 - gmx:100782886 281.182