Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03418 ATGTATTTCCACCATCAGCAACAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAGTGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATGAATGTTTCATTGAAGCAGTCAATCAACTTGGTGGATCAGATAAAGCTACACCTAAAACAGTATTGAAACTTATGGGAATACCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAGTACAGGATTAGTAGACATGGGAATGGACAAACTAACATTAGCAACAGTAAAATTGAAGTTATAGAAAGCAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAATTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCAGTTCTTGAAAAAGCTAAGGAGACACTAGGAAGTCAAAATTTAGGTACTATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAATTAGCATCAAGAGTATCAACTGAGAACCTTGATACTAAATTTTCAGAACTAAAGGAATTGAATGTACTTTGGCCTCAACAAACACATGAAAGTGAAGCCATTGATTATTCAATATCAAGTTTCTTAACTAATAGTGAGGACTCTCAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGAGCCTATAATGGCACATTTTGTGGTGAAGAAGTGAAGGAGAATATGATGTTTCTTTCCTCATCAAACGAAAAAGTACTAGAGGGATCGGGCGAATTACCAAAACGAACTTCAAGCCTCTTATCCATGAATATAGGAGTTCATGAAGGAGAAAATTTTTGTAGAAGAAATAATTCAAAGGAAGATTTAAAGAGTGAAGAATGGAAAAGAAGAAAGAGTATTGAAACTAGTGGAGTTCAACTTAAATTGAATAGTAACAAAATTTCTCAAGATTATAAATTGGCTAACTTTGAAGTGAAATTGGACTTGAATTCTCATGATGACAATGATGCCTCTCAATGCCAAAAATTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1161 0.3471 MYFHHQQQQARNMHALRMHMQGSGDSGLVLSTDAKPRLKWTPDLHECFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRHGNGQTNISNSKIEVIESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGSQNLGTMGLDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHESEAIDYSISSFLTNSEDSQRDQEIHNKGMNFRAYNGTFCGEEVKENMMFLSSSNEKVLEGSGELPKRTSSLLSMNIGVHEGENFCRRNNSKEDLKSEEWKRRKSIETSGVQLKLNSNKISQDYKLANFEVKLDLNSHDDNDASQCQKFDLNGFSWNC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03418 386 Coils Coil 135 155 - -
Trre4g03418 386 Pfam MYB-CC type transfactor, LHEQLE motif 133 178 IPR025756 -
Trre4g03418 386 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre4g03418 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 316 IPR044848 GO:0003700
Trre4g03418 386 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Trre4g03418 386 Gene3D - 34 92 - -
Trre4g03418 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 89 IPR006447 GO:0003677
Trre4g03418 386 FunFam Myb family transcription factor 34 92 - -
Trre4g03418 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03418 Trre-Chr4 40924843 40928339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03418 67 385 G2-like Transcription Factor Family AT3G04030 45.507 3.65e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g03418 Myb_DNA-binding 6.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03418 - - psat:127126075 596.275