Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03417 ATGTATTTCCACCATCAGCAACAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAGTGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATGAATGTTTCATTGAAGCAGTCAATCAACTTGGTGGATCAGATAAAGCTACACCTAAAACAGTATTGAAACTTATGGGAATACCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAGTACAGGATTAGTAGACATGGGAATGGACAAACTAACATTAGCAACAGTAAAATTGCTACACCAACCACAGAAGTTATAGAAAGCAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAATTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCAGTTCTTGAAAAAGCTAAGGAGACACTAGGAAGTCAAAATTTAGGTACTATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAATTAGCATCAAGAGTATCAACTGAGAACCTTGATACTAAATTTTCAGAACTAAAGGAATTGAATGTACTTTGGCCTCAACAAACACATGAAAGTGAAGCCATTGATTATTCAATATCAAGTTTCTTAACTAATAGTGAGGACTCTCAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGAGCCTATAATGGCACATTTTGTGGTGAAGAAGTGAAGGAGAATATGATGTTTCTTTCCTCATCAAACGAAAAAGTACTAGAGGGATCGGGCGAATTACCAAAACGAACTTCAAGCCTCTTATCCATGAATATAGGAGTTCATGAAGGAGAAAATTTTTGTAGAAGAAATAATTCAAAGGAAGATTTAAAGAGTGAAGAATGGAAAAGAAGAAAGAGTATTGAAACTAGTGGAGTTCAACTTAAATTGAATAGTAACAAAATTTCTCAAGATTATAAATTGGCTAACTTTGAAGTGAAATTGGACTTGAATTCTCATGATGACAATGATGCCTCTCAATGCCAAAAATTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1176 0.3495 MYFHHQQQQARNMHALRMHMQGSGDSGLVLSTDAKPRLKWTPDLHECFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRHGNGQTNISNSKIATPTTEVIESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGSQNLGTMGLDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHESEAIDYSISSFLTNSEDSQRDQEIHNKGMNFRAYNGTFCGEEVKENMMFLSSSNEKVLEGSGELPKRTSSLLSMNIGVHEGENFCRRNNSKEDLKSEEWKRRKSIETSGVQLKLNSNKISQDYKLANFEVKLDLNSHDDNDASQCQKFDLNGFSWNC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03417 391 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre4g03417 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 89 IPR006447 GO:0003677
Trre4g03417 391 FunFam Myb family transcription factor 34 92 - -
Trre4g03417 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 321 IPR044848 GO:0003700
Trre4g03417 391 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Trre4g03417 391 Coils Coil 140 160 - -
Trre4g03417 391 Gene3D - 34 92 - -
Trre4g03417 391 Pfam MYB-CC type transfactor, LHEQLE motif 138 183 IPR025756 -
Trre4g03417 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03417 Trre-Chr4 40924843 40928339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03417 67 390 G2-like Transcription Factor Family AT3G04030 45.533 1.61e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre4g03417 Myb_DNA-binding 6.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03417 - - psat:127126075 605.52