Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03416 ATGAGAGAGAAAGTTAGAGAGAGAGGGAGAGAGGATGGGAAACACGGGACAGGGAAACACGGGGCAGGGAAAATTCATCGCAACACAAATCCTGAAGTCATTGGTTACAGGAACCAGATTGATCGAACCACATCATTCTTCATCACAAACTTCCCAGTGGATACAAATGCATCAGATCTTTGGAATCTATTCAGCAAATACTGGAAGGTGGGAGAGGTATATATCCCAAACAGGCTTGACAGATCAGGGAAGCGGTTTGGTTTTGCGAGGTTTGAAGACGTCGACGATCGAGAACGACTGTTGGAGAAGTTAGAGAATACTTGGATTGGAACTTATAAGCTGAGAGCAAATCTTCCAAAGTTTAGAAGGGGGGAAACTGCTAATAATACTAACTCCAAATCTGGGGGGAAAAATGTTGGTCTTGGTAGAGAAGCTGCAAAGGAGGTACGGGTGGGGGTATCTTTCAAAGAGATAGTACAAGGTGCTACAAATGGAACCTCAAAAAAACAGCAAGGGTGGAAGGCGAAGCCTAATTTCAAACAGAAGGGTCGACTCACCGATGAAGAATACAGAGCTGGGATCATGGCAATAGATGCAGAGCCTCAGAATTTGAAGAAGTTGGAAGGAAGTTACGTGGGTACACTCAGAGATATCAAAGATGTTGACAGCATTCAAATGACCATGTGGATGGAGGGATTTCAACAAATAAAGGCCACACCTCTTGGTCTGGACTTAATTCTTCTAACTTGTCCAAGTATTGATGAGATTCAAAAAGCATACACTTCCAACAAACAGTGGTGGGAAAGGTGGTTCTCAATTGTTAGACCATGGAGACCTGATATTCTACCAAAAGGAAGAAGAACTTGGGTTCGATTGTTTGGGGTACCATTGCATATCTGGAGTTTGGAGGGATTCAAAAAAATTGTATGGAGGTATGGTACACTGCTGAATCTGGACCCCGAAACGTTGGAGCAATCACGCCTGGACGTTGCTAGAGCCCAAATAGCTGTCACTTATTGGGAGATGGTGGATGAGGTGATTGAAGTCAAAGTTGATGAAGAGCTGTTCATCATAAGAATGGTGGAGGAAAGACTTGGTTGTGTTGATCTTGGCCTTAACAAGGTCTCGGGGTCGAAGAATGGTGTTGGTGAATTGGTAGTGGATTCGGATTCAAGGTTAGGTGACGGTGGCTCAGTTTTAGGAGTGGAGGAAGGCTGGTCGGAGAAAAATTCCGACGGTGCCGACTCGGTGAATAATGAGGTGGTGGGATTTGAATCTGCCGGAGAGCTAGTGGGTAAAGACTGGGGGGTTGTTGAACAGGCTGTCAGGACAGATTTGCAAGAAGACAGAGAAAGTGGGTCTCAAAAGGTGAAAGAAAAGGAGGATACAAAAGGGTATGGGGCAGAGGTGGAAGAGGTTGATTGTGACTTGGTAGGAAGGGAGAGAGATGTTTGTGGTAGTGGTTGTTCCAGGGTGATGGAGACACCTAATCCTAGGGTGATTGTCCACAATTTGGGTTCCCAAGGGATTGAGTTAGGTGAAGAGGTGGGAGATAAGGAGCTTGAGGTATGTACTGAAGAAAATAACTCATTAGTTAATCAAAAAGAAGGAGGGGGCGTGTGGGTCCAAAGGGAGGGCAAGGAAGTCATTGTTTGGGAAGATCATCATAAATTAATATTAAAAGGGAGTACCTCAGCGCGGGTCCCACATGTGGTGGGCCGTGGGCTGCCTTTGCTTGTTGAAGAAAATACGGAGGTTAGAATTTTGAAAGATATGGAAGTGGCCCTACTCAATGAAGAATTATTTTTGAGTCTACAAAGGGAAAAATTAAAAAAAGGTAAGGAAGGAAGGTGCAATAAACGTCCACTGTTTTTTGGGCCAAATAAATGGGCTCAATTTGCTAATGCTAACAAGTCCACTGGGTCCAAAAAGAAGAAACAGAAGAAGAGTAAGGGGGGAAATTCAAAGAAGCAAAGGAAGGGTGCTCGGTCTTCTTTAGCCAGCGAAGAGGATTCAATTCGTGACGACGATTCTGAAACATCTGCAGTAAGCTCCAATGGCTGCGTTCAACAAATGATCCCGGTATCAAATATTCAAGTTGTGCTTAATGAAGGGGAAGTGAATAGGAGGTATGATGGCAATATGAGAGAAATTCGTGTAGAAGCCGAAAGACTTTTTCATATTGGTCTAAACTTGGGCATTACTAGTAATGAAGAGAGGCTGGATATGTTGGATAGAATGGTGGACTTGGAAGTTAGAGATGAGAAGAATTTTGAATCGGATGGGGGTGATGATGAGTGGAATATTGACACATATGGTGAGAGGGATAAAAAAATTCCTCTTCTAACAAACTTAATTAATGATATAGAGATCTTGGGTGAATCACGTGACTTGTCCGATGTTGAGAAGAAGGAGTGGAAGCAAAATTTGAAAGCCTTTCCAAAGGACGATCCCACCAAACCATGCAGGTTGACTGCTTTTGTTGGCTACAAGTCTGGGATGACCCATATAGTTAGGGAGGTCGAGAAACCTGGATCGAAGCTTCATAAGAAAGAGACACGTGAAGCAGTCACTATCATCGAAACTCCTCCGGTTGTTGTTGTTGGCGTGGTGGGATATGTTAAGACACCGCGAGGTCTTCGCACACTGAATACTGTTTGGGCTCAACATCTTAGTGAAGATATCAAGCGTCGGTTTTACAAGAACTGGAAGGAAGGAAAGAAAGATATTCAATCTCAGCTTGATAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCAGGACACTAGTCTCAGAGTAAACACTACAAAGGACAAGTTATTGCCATTGAGGTGGTTCTAG 2853 0.4367 MREKVRERGREDGKHGTGKHGAGKIHRNTNPEVIGYRNQIDRTTSFFITNFPVDTNASDLWNLFSKYWKVGEVYIPNRLDRSGKRFGFARFEDVDDRERLLEKLENTWIGTYKLRANLPKFRRGETANNTNSKSGGKNVGLGREAAKEVRVGVSFKEIVQGATNGTSKKQQGWKAKPNFKQKGRLTDEEYRAGIMAIDAEPQNLKKLEGSYVGTLRDIKDVDSIQMTMWMEGFQQIKATPLGLDLILLTCPSIDEIQKAYTSNKQWWERWFSIVRPWRPDILPKGRRTWVRLFGVPLHIWSLEGFKKIVWRYGTLLNLDPETLEQSRLDVARAQIAVTYWEMVDEVIEVKVDEELFIIRMVEERLGCVDLGLNKVSGSKNGVGELVVDSDSRLGDGGSVLGVEEGWSEKNSDGADSVNNEVVGFESAGELVGKDWGVVEQAVRTDLQEDRESGSQKVKEKEDTKGYGAEVEEVDCDLVGRERDVCGSGCSRVMETPNPRVIVHNLGSQGIELGEEVGDKELEVCTEENNSLVNQKEGGGVWVQREGKEVIVWEDHHKLILKGSTSARVPHVVGRGLPLLVEENTEVRILKDMEVALLNEELFLSLQREKLKKGKEGRCNKRPLFFGPNKWAQFANANKSTGSKKKKQKKSKGGNSKKQRKGARSSLASEEDSIRDDDSETSAVSSNGCVQQMIPVSNIQVVLNEGEVNRRYDGNMREIRVEAERLFHIGLNLGITSNEERLDMLDRMVDLEVRDEKNFESDGGDDEWNIDTYGERDKKIPLLTNLINDIEILGESRDLSDVEKKEWKQNLKAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHKKETREAVTIIETPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWKEGKKDIQSQLDKLKKYATVIRVLAHTQDTSLRVNTTKDKLLPLRWF 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03416 950 FunFam 60S ribosomal protein L3 825 910 - -
Trre4g03416 950 Gene3D - 24 154 IPR012677 -
Trre4g03416 950 CDD RRM_SF 47 117 - -
Trre4g03416 950 MobiDBLite consensus disorder prediction 641 658 - -
Trre4g03416 950 MobiDBLite consensus disorder prediction 445 465 - -
Trre4g03416 950 MobiDBLite consensus disorder prediction 635 688 - -
Trre4g03416 950 MobiDBLite consensus disorder prediction 1 29 - -
Trre4g03416 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Trre4g03416 950 Gene3D Ribosomal protein L3, domain 3 801 868 IPR044892 -
Trre4g03416 950 MobiDBLite consensus disorder prediction 1 19 - -
Trre4g03416 950 SUPERFAMILY RNA-binding domain, RBD 26 125 IPR035979 GO:0003676
Trre4g03416 950 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 802 941 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trre4g03416 950 Gene3D - 869 946 - -
Trre4g03416 950 SUPERFAMILY Translation proteins 804 941 IPR009000 -
Trre4g03416 950 SMART rrm1_1 45 117 IPR000504 GO:0003723
Trre4g03416 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 114 IPR000504 GO:0003723
Trre4g03416 950 Pfam Ribosomal protein L3 808 940 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trre4g03416 950 Pfam Domain of unknown function (DUF4283) 218 335 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03416 Trre-Chr4 40889427 40897632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03416 809 931 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 75.000 2.49e-56 198