Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03413 ATGGAAGAACCTATTATGGATAACAAAAGTGATGAAGCTCTTGATTTACCTGCTGGTTTCAGATTCCACCCTACTGATGATGAAATCATTACTTGTTATTTAATTAATAAGGTTTTGAATATTAACTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAGCCATGGGATTTACCAAAGAAAGCTAAGATGGGTGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAGTATCCAACAGGAACAAGAACTAATAGAGCAACTGAATCTGGATATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAACTAACCAACTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTTATGCACGAATTTAGATTGGATGGAAAATTAGCAACTTGCAACCTTCCTAAGGATGCTAAGGATGAATGGGTTGTGTCAAGGATTTTCAACAAGAACATCAACAATAATGAAGTTAAAAGGACTAGTTCAATTTCCAATCTTTTAAGGATAAACTCAATAGGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTTGATCCTCCTTTTAGCAACAACACTATTGATCATAATCATGACTTCAAAGGCACCAATTCATCACCTTCATCATCAAATGGTTACTATTTTCCAACCTACTTAATCAACAATAATGAAATTCATCTCACAAATCATCATGTCACAAACCAAGCAAATTTCAATAATCCAATGCAAAAAAGCACATTTTCATCACATCAACCTCAAATCCAAAATCCAAAAGCACCTTTGAACCAAAATATGTTATCAAATTTATATTCTTATATGAATCAAGGAAATAATAATAATAATAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTAAGTGTTTCACAAGACACATGTTTGAGCAATGACATAAACAATGACACATCTTCTGTGGTCTCAAAGCAAGAAAATATGGGAAGGAATACAACATTGTATGAAGAACTTGAGGGCCCTTCATCAATTGGTCCCCTCTCAAATTTTGAGTATTTGTGGGATAACTATTGA 1149 0.3359 MEEPIMDNKSDEALDLPAGFRFHPTDDEIITCYLINKVLNINFSAIAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKTNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNINNNEVKRTSSISNLLRINSIGDDLLDFSSLPPLVDPPFSNNTIDHNHDFKGTNSSPSSSNGYYFPTYLINNNEIHLTNHHVTNQANFNNPMQKSTFSSHQPQIQNPKAPLNQNMLSNLYSYMNQGNNNNNNNSNGYIYGLENKECKMEQFSTNNSMVSVSQDTCLSNDINNDTSSVVSKQENMGRNTTLYEELEGPSSIGPLSNFEYLWDNY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03413 382 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Trre4g03413 382 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Trre4g03413 382 FunFam NAC domain-containing protein 100-like 25 172 - -
Trre4g03413 382 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Trre4g03413 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 302 - -
Trre4g03413 382 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03413 Trre-Chr4 40824925 40826903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03413 2 380 NAC Transcription Factor Family AT5G18270 48.964 7.69e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g03413 NAM 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03413 - - psat:127126114 474.167