Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03412 ATGGACCTCGAATCCACCAAAATGTTGAAACACTCCGGCCGCCATCCTTCGCCGCCGGAGTCGTTCGCCGACAAGATCTACCAATTCCGTGGCGCCTTTCTAATGGTGGTACTCCCTCTCCTCCTCGTCACGCTCATACTTTACGTTATGCCTTCAACTTCTTCCAATGAATCCATCGAAGATTACGCCCTTACGCACCGTAAGATTTCTCCCGATCGTATACCGTCGGATTCTTTTGCCGTCATTTTCGACGCTGGTAGCTCCGGTAGCCGCGTTCATGTCTTTCGATTTGATCGGAACCTTGATCTCGTTCACATTGGTAAAGATCTCGAGGTTTTCTTGCAGCTTAAACCTGGTTTGAGTGCTTATGCACAGAATCCACAACAGGCAGCGGAATCTCTTATTTCTCTTTTGGATAAAGCGGAAAGTGTTGTTCCTTTGGAGTTTCGTTCCATGACACCAGTTAGAGTTGGGGCAACTGCTGGATTGAGGGCTTTGGAAGGGGATGCTTCTGATAGGATCCTGCAAGCGGTCCGAGATTTGCTTAAGCAAAGAAGTACTCTAAAATCCGAGCCTAATGCGGTTGCTGTGCTAGATGGAAACCAAGAAGGTGCTTTTCAATGGGTGACTATTAATTATCTATTGGGAAAGTTGGGAAGAGATTATTCAGACACTGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCATATGCAATCTCAGAGACAAGTGCTGCCAAGGCTCCAAAAGTACCGGATGGAGAAGACCCTTATGTCAAGGAGATGTTCCTAAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTACGCTATGGTTTACTAGCAGCTCGTGCAGAGATCTTAAAGCATTATGACGATTCTGGAAACCCTTGCATCTTAGATGGCTATGAAGGATCTTACAAGTACGGAGGAAAGTCATTTAATGCCTCGTCCTCTGGCTCAAGCTTCAATGAATGCAAAAGTATAGCTCTTAAGGCTCTCAAGGTTAATGAGTCAATATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGTGGCGGTGATGGACAGAAGAACCTTTTTGTCGCCTCATTTTTCTTTGATCGTGCAGCCGAGGCTGGTTTTGCTGATCCAAAGTCACCCGTCGCAAAAGTTCGTCCTGTGGATTTTGAGGAGGCAGCTAAGAAAGCTTGTCAAACAGAACTCGAGGATGCCAAATCCAGTTATCCACGCGTTGATGATGGGAACCTTCCATATATATGCATGGATCTTGTATACCAGTATACATTGCTTGTTGTTGGATTCGGCCTAGATCCATTGCAGCAGATTACATTAGTGAAGCAAGTTAAATATCATGATTCTCTTGTTGAAGCTGCATGGCCCCTAGGCAGCGCCATAGAAGCTGTATCATCTATACGATGA 1440 0.4542 MDLESTKMLKHSGRHPSPPESFADKIYQFRGAFLMVVLPLLLVTLILYVMPSTSSNESIEDYALTHRKISPDRIPSDSFAVIFDAGSSGSRVHVFRFDRNLDLVHIGKDLEVFLQLKPGLSAYAQNPQQAAESLISLLDKAESVVPLEFRSMTPVRVGATAGLRALEGDASDRILQAVRDLLKQRSTLKSEPNAVAVLDGNQEGAFQWVTINYLLGKLGRDYSDTVGVVDLGGGSVQMAYAISETSAAKAPKVPDGEDPYVKEMFLRGRKYYLYVHSYLRYGLLAARAEILKHYDDSGNPCILDGYEGSYKYGGKSFNASSSGSSFNECKSIALKALKVNESICTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPKSPVAKVRPVDFEEAAKKACQTELEDAKSSYPRVDDGNLPYICMDLVYQYTLLVVGFGLDPLQQITLVKQVKYHDSLVEAAWPLGSAIEAVSSIR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03412 479 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 198 213 IPR000407 GO:0016787
Trre4g03412 479 CDD NBD_sugar-kinase_HSP70_actin 81 240 - -
Trre4g03412 479 Gene3D - 79 472 - -
Trre4g03412 479 FunFam Apyrase 1 199 456 - -
Trre4g03412 479 Gene3D Exopolyphosphatase. Domain 2 199 456 - -
Trre4g03412 479 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 23 477 IPR000407 GO:0016787
Trre4g03412 479 Pfam GDA1/CD39 (nucleoside phosphatase) family 76 477 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03412 Trre-Chr4 40802208 40809238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03412 13 477 Calmodulin-binding Proteins AT3G04080 67.521 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03412 K14641 - gmx:100804818 748.814