Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03411 ATGGTGAATACAATAACAGCAGCAATTGGAGATTTAGTATTGACTTTCATATGGATGTTCATTACTTCTACCCTTGGATTAATCACATCAGAAATTATCAATTTTTTTGATCTTCAATTTGTATCTTATAATGGTGTTAATTACCCTTTTATTATAATCACAACTGTTTTAATTTTCATTATTATATTTACTTTTACTGCAATTGGTAATGCTATGGGTGGTGCCAGTTTCAACCCTACAGGCAATGCTTCTTTCTATGCTGCTGGTCTTGGTTCTGATACCCTTTTCTCTATGGCTCTTCGTTTCCCTGCTCAGGCATTAGGTGCGGTGGGCGGTGCTATGGCAATTAAAGAAGTAATGCCACCAAAATATAGCCACATGATCGGAGGACCAGCTTTGAAGGTTGATTTGCATACCGGAGCTATTGCAGAAGGGGTATTGACATTTGTAATCACTTTTCTCGTTCTCTTCATCTTGCTCAGAGGTCCTCGTAGTGAATTCATGAAGACTTTGTTGATGGCTATATCAACCGTTGCTATGATCCTCATCGGTTCTGCTTACACCGGACCATCCATGAACCCTATCCTTGCATATGGTTGGGCATACCTAGATAACTGGCACAACACATGGGACCAATTCTATGTTTATTGGATTTGTCCTTTCATTGGATCAATACTTGCTGCTTGGTTGTTTCGTGCTGTTTTCCCTCCAAAAGTGGTAAAGAAACAAAAGAAAGCATGA 741 0.3914 MVNTITAAIGDLVLTFIWMFITSTLGLITSEIINFFDLQFVSYNGVNYPFIIITTVLIFIIIFTFTAIGNAMGGASFNPTGNASFYAAGLGSDTLFSMALRFPAQALGAVGGAMAIKEVMPPKYSHMIGGPALKVDLHTGAIAEGVLTFVITFLVLFILLRGPRSEFMKTLLMAISTVAMILIGSAYTGPSMNPILAYGWAYLDNWHNTWDQFYVYWICPFIGSILAAWLFRAVFPPKVVKKQKKA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03411 246 PANTHER AQUAPORIN SIP1-1 4 245 IPR044222 GO:0015250
Trre4g03411 246 Pfam Major intrinsic protein 6 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Trre4g03411 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g03411 246 FunFam Aquaporin SIP1-1 2 246 - -
Trre4g03411 246 SUPERFAMILY Aquaporin-like 3 238 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03411 Trre-Chr4 40722833 40727278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03411 2 246 Major Intrinsic Protein MIP AT5G18290 51.210 1.75e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03411 K09875 - gmx:100788738 345.51