Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03378 ATGGTTGATTCTAACCCAATTAACGATGACCCATCAACGATTCAATCGCTCTCAAACGATGCACCTAATGATGCAGAGAATGATGTGAAGTTGCGTTCTAAAGACCAGAGAGATGCTCTTCCAGGTGAGCCGATGTGTATTGTATGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGACGATGATGTTTGCAGTTTGGAATGTAAACAATCGGTACTATGTCGAATTTCCAAATCCTCTACTCGTGTTGGAGGTCTTCCGCCACCTAAAAAACTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACAAATCCGGAACGGCGTCTTTAGGAGGTGATCAGATTCAGGCTGAATTGCTTCGAAAGAAACTTGACATTCATGTGAAGGGTGTTGTTTCGGCACCAGTTTTTTCGTTCACTTCATGTAACCTCCCTGACAAACTCCTCCACAACATAGAAGCAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACGGGATCCGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCACGTTGTGTAAATCATCGTTTGACTTATGTTTCAGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCATGCAAAATTGCTCGGAAAAGGGTTGCCATTTAAAACCGCACTTGTGGTTGGTGGTGATGCAATGGCTAGACAACTCTACCGCATTCAACAAGGAGTCGAATTGATTGTTGGAACACCAGGAAGGCTTGTTGATCTTTTAACGAAGCACGAGATCGACTTAGATGACATAACGACATTTGTTGTCGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGATCAGGTCTTACAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTTTTCGGCAACAATGTCCGATGATTTAGAGAAGATGGTGAACTCTCTGGCAAAGGATACAGTGGTAATAACCGTTGGCGAACCTAATAGACCAAATAAAGCTGTGAAGCAGCTAGCTATTTGGGTCGAATCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATACGTCAGCTCGAGACTCGGTGCAGATCTCTTGGCAAATGCAATTACAGTTTCAACAGGAATTAAAGCTATTTCAATTCACGGTGAGAAGTCCATGACCGAAAGGAGAGATATAATGCAGTCATTTATGGTCGGTGAGTTCCCGGTAGTTGTGGCTACCGGAGTTTTAGGTAGAGGGGTTGATCTATTGGGCGTAAGGCAAGTGATTGTATTTGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGAGCTTCTAGAATGGGAGAAGAAGGTCAAGCCATAGTTTTTGTGAATGACGAGAATAAGAATGTTTTTGCCGAGCTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAGCTTATTAATTCACAGTATACCACAAGAGTTTTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGTACAGATGA 1623 0.4264 MVDSNPINDDPSTIQSLSNDAPNDAENDVKLRSKDQRDALPGEPMCIVCGRYGEYICDETDDDVCSLECKQSVLCRISKSSTRVGGLPPPKKLPAADECFYVRDTDNKSGTASLGGDQIQAELLRKKLDIHVKGVVSAPVFSFTSCNLPDKLLHNIEAAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISRCVNHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDITTFVVDEVDCMLQRGFRDQVLQIFTALSQPQVLMFSATMSDDLEKMVNSLAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVSSRLGADLLANAITVSTGIKAISIHGEKSMTERRDIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVFAELVDVLKSGAAAIPRELINSQYTTRVFSGGKGSKKRKYR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03378 540 Gene3D - 25 83 - -
Trre4g03378 540 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Trre4g03378 540 SMART helicmild6 401 483 IPR001650 -
Trre4g03378 540 CDD SF2_C_DEAD 360 492 - -
Trre4g03378 540 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Trre4g03378 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 351 IPR027417 -
Trre4g03378 540 Gene3D - 350 524 IPR027417 -
Trre4g03378 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Trre4g03378 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Trre4g03378 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Trre4g03378 540 SMART ultradead3 160 363 IPR014001 -
Trre4g03378 540 MobiDBLite consensus disorder prediction 1 26 - -
Trre4g03378 540 Pfam HIT zinc finger 44 70 IPR007529 -
Trre4g03378 540 Gene3D - 114 349 IPR027417 -
Trre4g03378 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Trre4g03378 540 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 138 522 - -
Trre4g03378 540 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03378 Trre-Chr4 40360427 40363490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03378 142 503 Eukaryotic Initiation Factors Gene Family AT1G72730 33.243 1.78e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03378 K19466 - gmx:100781473 837.025