Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03374 ATGAAGGAGAACAGAGTTGGTAATATTTATATGTTGGATGAATTGGAATCTAGATTAGCCTCATCTTCTGATGCCGAAGTTAAAACACTGTTGCCCTTACCACAGATTGTGGTGTGGAGATTTCTTCAAAGTTCAAAAGGTTCAGATGTAGTCACAACAAAGCAAGCCTTACTTTTCATTATTTTGCTTCAGTACATTCCAAGATTTCTCCGTATGGTACCACTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTCGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTATTGTTCATGCTTGCTAGCCATATAGTTGGGTCATTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGAAGAAGGCTTGTAGCGACAATGGATACAACAAGAAATTCTTGTATTGTGATAATGATAATCCCCCTTTTGACTATGGTATATTCACACAAGCCTTGAAATCTGGCATTGTTTCATCTAACAAGTTCTTGTCCAAGTACGTTTATTGTTTATGGTGGGGGCTTCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGTACATACACTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTAGAGGAAATGAGAGTCAAGAGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTTCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTGGCGACACGCGGTGTAGATGAAGAAATTTTGGTACAGAGTCTACCAAAGGACCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCATTAGTTAGAAGGGTTCCTTTATTTGAGATCACAGGTTTGCTGAATGAATCTATTTTCCTGGCAATTTAG 951 0.4048 MKENRVGNIYMLDELESRLASSSDAEVKTLLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKACSDNGYNKKFLYCDNDNPPFDYGIFTQALKSGIVSSNKFLSKYVYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEEILVQSLPKDLQRDIKRHLCLALVRRVPLFEITGLLNESIFLAI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03374 316 Gene3D Helix hairpin bin 228 292 - -
Trre4g03374 316 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 303 - -
Trre4g03374 316 SUPERFAMILY Voltage-gated potassium channels 65 264 - -
Trre4g03374 316 Gene3D - 29 226 - -
Trre4g03374 316 PRINTS EAG/ELK/ERG potassium channel family signature 170 187 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03374 316 PRINTS EAG/ELK/ERG potassium channel family signature 264 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03374 316 PRINTS EAG/ELK/ERG potassium channel family signature 103 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03374 316 PRINTS EAG/ELK/ERG potassium channel family signature 196 207 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03374 316 PRINTS EAG/ELK/ERG potassium channel family signature 214 223 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03374 316 FunFam Cyclic nucleotide-gated ion channel 1 228 292 - -
Trre4g03374 316 Pfam Ion transport protein 59 227 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03374 Trre-Chr4 40309256 40314921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03374 29 303 Ion Channels AT5G57940 76.238 3.60e-166 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03374 K05391 - gmx:100820202 483.026