Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03373 ATGGACTTCAAAAATGGCATCAAACTTGTTAGGTTCAACTCCGATGGCAAAAACCATAAACAACAACGTCAACAACCACCATCATCTTCTTCAATGCTTAAACCTAATAGTAGCAATGTTACACCATTAGGGAAAACCAGAATATCACGATCTAAGGTATTTTCAGAGGATCATGAACCATGGAGAAAAAGAATACTTGATCCTGGTAGTGAGATTGTGTTGAAATGGAATCGAATTTTTATAGTTTTTTGTTTGGTAGCACTTTTTGTTGATCCTTTATATTTTTATTTACCTAGTGTGGTACAAAATACAAATTCTTCTTGTGTTAGAACTGATTTTACATTGAGGATTGTTGTTACGTTTCTTCGAACTATTGCCGATGTTTTTTATCTGTTGCACTTGATTATTAAGTTCAGAACAGCTTATGTTGCACCTAGTTCGCGTGTGTTTGGAAGGGGTGAACTTGTTATGGACCCGAGTAAAATTGCAAGGCGATATATTAGATCCGATTTCTTCATTGATTTTATTGCCACACTACCATTGCCACAGATGGTTATCTGGTTTATCATACCTGCTACAAGGAGTCCTCAGACTGATCACAAGAATAATGCTCTTGCATTGATTGTCTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCTGGAGCTGCATATAATTTGCTATTGTACATGTTGGCTAGCCATGTTTTAGGGGCATCCTGGTATCTTCTGTCTGTTGACCGATATACTACTTGTTGGAAATCCTTATGCAAAAAGGAACGTAACCCTGACAATTGCTTTCTCTACCTAGACTGCAGTTCTTTGAATAATGGTATGCGCAAGATATGGGAAAATAGTACAGATGTGTTTAGCAGCTGTGACCCCAGTAATGATGACATTCAGTTCAAGTATGGGTTATTTGAAAATGCATTAACAAAGAATGTTGTCTCTTCAAACTTCATACCAAAATACTTATATTGTTTATGGTGGGGGTTGCAGCAACTAAGTTCTTACGGACAGAACCTAGATACAACCACATTTATTGGAGAAACGTCATTTGCTATTGTGATTGCCATCTTGGGTCTTGTATTATTTGCTCATTTGATTGGGAACATGCAGACATATTTACAATCAATTACTATAAGGCTTGAAGAGTGGAGGCTAAAGCGAAGAGACACAGAGGAGTGGATGGGACATCGGCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTTCGTTCATTGCCAACTGATCTTCGTCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCGATATGTGAGCGGCTGGTATCTTCTCTAAGCACTCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGTTGTTTATCATTAGAGGCAGACTAGACAGTTCTACGACAAATGGTGGCCGGACTGGTTTTTTCAACTCAATCATATTGAGACCTGGAGATTTTTGCGGTGAGGAACTTCTTTCTTGGGCACTACTCCCAAAATCAACCATGAATTTGCCGTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGACCTAAAATTCGTCGCTAATCAATTTAGGCGCCTCCACAGCAAAAAGCTGCAGCACACCTTTCGATTTTACTCTCATCATTGGAGGACTTGGGCCGCTTGTTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAGATCTTGGTTTGAGGGAATCCCTTCCTTTAGATGAGACAGCGCCCAGTGAGAGATTACAAGAGGAGGAATATCCTATAGGTTCAAACTCATCACAGGCTAAATTGAACCTCGGGGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTAAAGATGAAAGACGACCTACCTAAGCTTCGAAAGCCAGAAGAGCCCGACTTCTCCACTGAAGCAGATGATGATTAG 2133 0.4018 MDFKNGIKLVRFNSDGKNHKQQRQQPPSSSSMLKPNSSNVTPLGKTRISRSKVFSEDHEPWRKRILDPGSEIVLKWNRIFIVFCLVALFVDPLYFYLPSVVQNTNSSCVRTDFTLRIVVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPSKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSLCKKERNPDNCFLYLDCSSLNNGMRKIWENSTDVFSSCDPSNDDIQFKYGLFENALTKNVVSSNFIPKYLYCLWWGLQQLSSYGQNLDTTTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLGLRESLPLDETAPSERLQEEEYPIGSNSSQAKLNLGVTILASRFAANTRRGALKMKDDLPKLRKPEEPDFSTEADDD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03373 710 MobiDBLite consensus disorder prediction 19 44 - -
Trre4g03373 710 SUPERFAMILY cAMP-binding domain-like 404 596 IPR018490 -
Trre4g03373 710 SMART cnmp_10 474 605 IPR000595 -
Trre4g03373 710 Pfam Cyclic nucleotide-binding domain 498 585 IPR000595 -
Trre4g03373 710 SUPERFAMILY Voltage-gated potassium channels 70 396 - -
Trre4g03373 710 ProSiteProfiles cAMP/cGMP binding motif profile. 474 604 IPR000595 -
Trre4g03373 710 MobiDBLite consensus disorder prediction 688 703 - -
Trre4g03373 710 Gene3D - 74 399 - -
Trre4g03373 710 MobiDBLite consensus disorder prediction 688 710 - -
Trre4g03373 710 CDD CAP_ED 474 605 IPR000595 -
Trre4g03373 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 703 - -
Trre4g03373 710 FunFam Cyclic nucleotide-gated ion channel 1 472 590 - -
Trre4g03373 710 Gene3D Jelly Rolls 472 592 IPR014710 -
Trre4g03373 710 Pfam Ion transport protein 76 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre4g03373 710 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03373 710 PRINTS EAG/ELK/ERG potassium channel family signature 134 143 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03373 710 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03373 710 PRINTS EAG/ELK/ERG potassium channel family signature 251 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03373 710 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g03373 710 FunFam Cyclic nucleotide-gated ion channel 1 401 465 - -
Trre4g03373 710 MobiDBLite consensus disorder prediction 14 44 - -
Trre4g03373 710 Gene3D Helix hairpin bin 402 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03373 Trre-Chr4 40287679 40293953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03373 8 709 Ion Channels AT4G30360 70.474 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03373 K05391 - gmx:100808425 1245.34